Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   NAA64_RS00205 Genome accession   NZ_CP097887
Coordinates   48034..49383 (-) Length   449 a.a.
NCBI ID   WP_167868015.1    Uniprot ID   -
Organism   Staphylococcus arlettae strain SA283     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 43034..54383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAA64_RS00180 (NAA64_00180) - 43088..43591 (-) 504 WP_037539356.1 DUF1643 domain-containing protein -
  NAA64_RS00185 (NAA64_00185) - 43606..43917 (-) 312 WP_002506254.1 DUF960 family protein -
  NAA64_RS00190 (NAA64_00190) - 44004..44354 (-) 351 WP_002506255.1 SAUGI family uracil-DNA glycosylase inhibitor -
  NAA64_RS00195 (NAA64_00195) - 44918..45847 (-) 930 WP_002506256.1 ketopantoate reductase family protein -
  NAA64_RS00200 (NAA64_00200) ccrB 46385..48013 (-) 1629 WP_167868016.1 cassette chromosome recombinase CcrB Machinery gene
  NAA64_RS00205 (NAA64_00205) ccrA 48034..49383 (-) 1350 WP_167868015.1 cassette chromosome recombinase CcrA Machinery gene
  NAA64_RS00210 (NAA64_00210) - 49561..49818 (-) 258 WP_070817192.1 hypothetical protein -
  NAA64_RS00215 (NAA64_00215) cch1 49883..51676 (-) 1794 WP_167868014.1 cassette chromosome replicative helicase -
  NAA64_RS00220 (NAA64_00220) ssb 51676..51969 (-) 294 WP_107597481.1 cassette chromosome ssDNA-binding protein -
  NAA64_RS00225 (NAA64_00225) - 52141..53652 (-) 1512 WP_167868013.1 hypothetical protein -
  NAA64_RS00230 (NAA64_00230) - 53714..54379 (-) 666 WP_031912433.1 Cthe_2314 family HEPN domain-containing protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52339.34 Da        Isoelectric Point: 10.0672

>NTDB_id=693339 NAA64_RS00205 WP_167868015.1 48034..49383(-) (ccrA) [Staphylococcus arlettae strain SA283]
MKQAIGYLRQSTTKQQSLAAQKQTIKALAEKHNIQHITFYSDKQSGRTDKRNGYQQITELIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGIKEKAKQGKMITTHAPFGYHYH
NGTFTIDTVKAPTIKAVFNYYLQGYGYKKIAQYLEEDNKLINRKPYQVRNIILNPNYCGRVINQYGQYENMFPAIVSTTI
YEEAQVTRTQKQVKRKPSENQLKQKIKCPYCHSTLTNMTVRKPDHSLRYYVCPQNMNNARFVCEFKGINAENLEKQVLES
CQKFFRNQQLYSKIKHAIEKQLKKQRMHDTSNTLTHEKLIEKLAQGTIDVETFREQSQSINLQKKPIQAISDIRIKASLQ
KVIQKSFTLNMLHPYIDEIHITKNKALVGIYFKNEPLNIVNQTSQSSIV

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=693339 NAA64_RS00205 WP_167868015.1 48034..49383(-) (ccrA) [Staphylococcus arlettae strain SA283]
ATGAAACAAGCAATTGGTTACTTACGACAGAGCACTACAAAGCAACAATCCTTAGCAGCACAAAAACAAACCATCAAGGC
ATTAGCCGAAAAACATAATATTCAACACATTACCTTTTATAGCGATAAACAATCAGGACGTACTGATAAGCGGAATGGTT
ATCAACAAATTACTGAACTGATTCAACAGGGACAATGTGACGTATTATGTTGTTATAGATTAAACCGACTTCATCGCAAT
CTTAAAAATGCATTAAAACTCATGAAATTGTGTCAAAAATACCATGTCCATATCTTAAGCGTTCATGATGGCTATTTTGA
TATGGATAAAGCATTCGATCGGCTCAAACTCAATATTTTCATCAGCTTGGCCGAACTAGAATCTGATAATATAGGTGAAC
AAGTCAAAAATGGAATCAAAGAAAAAGCTAAACAAGGTAAAATGATTACAACACATGCACCCTTTGGGTATCACTATCAT
AATGGTACTTTCACAATAGACACAGTAAAAGCACCAACAATAAAAGCTGTGTTCAATTATTACCTTCAAGGTTATGGTTA
TAAAAAAATTGCACAATATTTGGAAGAAGATAATAAGTTAATCAACCGAAAACCCTATCAAGTGCGTAATATTATCCTTA
ACCCTAATTACTGTGGCCGTGTTATCAATCAATACGGACAATATGAAAACATGTTCCCAGCTATTGTCAGTACAACGATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTAAAACGTAAGCCGTCAGAAAATCAACTCAAACAAAAAATCAA
ATGTCCCTATTGTCATTCGACACTCACAAACATGACTGTCCGAAAACCAGATCATTCATTGCGTTACTATGTCTGTCCGC
AAAATATGAATAATGCTCGCTTTGTTTGTGAATTTAAAGGAATCAACGCTGAAAACCTGGAAAAACAGGTCTTAGAATCT
TGCCAAAAATTCTTTCGAAACCAACAGCTCTATTCGAAAATCAAACATGCTATTGAGAAACAGCTCAAAAAACAAAGGAT
GCATGATACTAGTAACACATTAACTCATGAAAAGCTCATTGAAAAATTAGCACAAGGAACAATTGATGTAGAAACATTCA
GAGAACAATCTCAATCAATAAACCTACAGAAAAAGCCTATACAAGCAATAAGTGATATTCGGATAAAAGCATCACTACAA
AAGGTTATACAGAAAAGTTTCACGTTAAACATGCTGCATCCCTATATTGATGAAATTCACATTACTAAAAACAAAGCCCT
TGTTGGGATTTATTTCAAAAATGAACCATTGAACATTGTGAACCAAACCTCGCAATCATCGATTGTCTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(170-249)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

85.301

100

0.853
  ccrA Staphylococcus aureus N315

73.051

100

0.731