Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   NAA64_RS00200 Genome accession   NZ_CP097887
Coordinates   46385..48013 (-) Length   542 a.a.
NCBI ID   WP_167868016.1    Uniprot ID   -
Organism   Staphylococcus arlettae strain SA283     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 41385..53013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAA64_RS00170 (NAA64_00170) - 41640..42722 (-) 1083 WP_167868017.1 hypothetical protein -
  NAA64_RS00175 (NAA64_00175) - 42853..43074 (-) 222 WP_002506252.1 hypothetical protein -
  NAA64_RS00180 (NAA64_00180) - 43088..43591 (-) 504 WP_037539356.1 DUF1643 domain-containing protein -
  NAA64_RS00185 (NAA64_00185) - 43606..43917 (-) 312 WP_002506254.1 DUF960 family protein -
  NAA64_RS00190 (NAA64_00190) - 44004..44354 (-) 351 WP_002506255.1 SAUGI family uracil-DNA glycosylase inhibitor -
  NAA64_RS00195 (NAA64_00195) - 44918..45847 (-) 930 WP_002506256.1 ketopantoate reductase family protein -
  NAA64_RS00200 (NAA64_00200) ccrB 46385..48013 (-) 1629 WP_167868016.1 cassette chromosome recombinase CcrB Machinery gene
  NAA64_RS00205 (NAA64_00205) ccrA 48034..49383 (-) 1350 WP_167868015.1 cassette chromosome recombinase CcrA Machinery gene
  NAA64_RS00210 (NAA64_00210) - 49561..49818 (-) 258 WP_070817192.1 hypothetical protein -
  NAA64_RS00215 (NAA64_00215) cch1 49883..51676 (-) 1794 WP_167868014.1 cassette chromosome replicative helicase -
  NAA64_RS00220 (NAA64_00220) ssb 51676..51969 (-) 294 WP_107597481.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62403.05 Da        Isoelectric Point: 9.5814

>NTDB_id=693338 NAA64_RS00200 WP_167868016.1 46385..48013(-) (ccrB) [Staphylococcus arlettae strain SA283]
MQQLKQKRVGIYVRVSTEIQSTEGYSIDGQINQIREYCDFNNFGVVDVYADRGISGKSMNRPELQRLLKDANEGHIDSVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYGKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSTSAIAYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDNPVVADGKHSPIISQELWDKVHSRMKQVSQKPQVHGKGTNLLTGIIHCPECGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRAEVIEKYVMDQILEIVKSDKVLKQVVERVNQDSQIDMAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKHQQNQEKPSYDTKQIAALLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKHENHKKQFYVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=693338 NAA64_RS00200 WP_167868016.1 46385..48013(-) (ccrB) [Staphylococcus arlettae strain SA283]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAGTACTGAAGGCTATAGTAT
CGATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGGTGTTGTAGATGTATACGCAGATAGAGGTA
TTTCTGGAAAATCTATGAACCGACCAGAACTACAACGTTTGTTAAAAGATGCGAACGAAGGTCATATCGATTCTGTTATG
GTCTACAAAACAAACCGACTAGCACGTAATACATCAGACTTACTGAAAATTGTCGAAGATTTACATAAACAAAATGTCGA
ATTTTTCAGTTTGTCTGAACGTATGGAAGTCAATACGAGTAGCGGTAAGCTCATGTTACAAATACTTGCAAGCTTTTCTG
AATTTGAAAGAAACAATATTGTCGAGAACGTATTCATGGGACAAACCCGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCATTAGGCTATGGTAAGATACCAGATAATAAACATGAACTCATGATTAATCAACATGAAGCCAATATCGTTAAATA
CATCTTTGAATCATATGCGAAAGGACATGGATATCGTAAAATTGCTAATGCACTTAATCATAAAGGTTATGTAACAAAGA
AAGGTAATCCATTCAGTACATCAGCTATAGCATACATCCTTTCCAATCCTTTTTACATTGGTAAAATACAATTTGCGAAA
TATAAAGATTGGAATGAAAAGCGACGTAAAGGACTTAATGATAATCCTGTAGTAGCTGACGGGAAGCATTCACCTATCAT
TAGTCAAGAACTATGGGATAAAGTACATTCACGTATGAAGCAAGTTAGTCAAAAACCTCAAGTTCATGGAAAAGGAACCA
ATCTATTAACAGGTATTATTCACTGCCCAGAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGCTATTATTCTTGTAGTAACTTTCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGTGT
TAGAGCTGAGGTGATTGAGAAATACGTTATGGATCAAATACTTGAAATTGTCAAAAGCGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGATAGTCAAATTGATATGGCTGCACTTAACCATGATATCGCATATAAGCAACAACAATTTGAT
GAAATAAACACTAAACTAAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCAATGACATTACAAATCAAATGAATCAACTCAAGCACCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAACTCAAA
GCTTTGTACCTAACGGTTATTGACCGTATTGACATTCGTAAACATGAGAATCATAAAAAGCAATTCTACGTTACACTAAA
ACTTAATAATGAAATTATTAAACAACTTTTCAATAATAATAATCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

84.686

100

0.847