Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   NAG75_RS05875 Genome accession   NZ_CP097873
Coordinates   1076732..1078135 (+) Length   467 a.a.
NCBI ID   WP_264402561.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain GL-601     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1071732..1083135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG75_RS05855 rsxB 1072243..1072839 (-) 597 WP_005494493.1 electron transport complex subunit RsxB -
  NAG75_RS05860 rsxA 1072843..1073421 (-) 579 WP_005380762.1 electron transport complex subunit RsxA -
  NAG75_RS05870 uvrB 1074412..1076442 (+) 2031 WP_020841051.1 excinuclease ABC subunit UvrB -
  NAG75_RS05875 luxO 1076732..1078135 (+) 1404 WP_264402561.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  NAG75_RS05880 luxU 1078138..1078476 (+) 339 WP_015297057.1 quorum-sensing phosphorelay protein LuxU -
  NAG75_RS05885 - 1078552..1079445 (-) 894 WP_017447831.1 YvcK family protein -
  NAG75_RS05890 moaA 1079741..1080730 (+) 990 WP_005461510.1 GTP 3',8-cyclase MoaA -
  NAG75_RS05895 moaB 1080833..1081345 (+) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  NAG75_RS05900 moaC 1081372..1081851 (+) 480 WP_005461493.1 cyclic pyranopterin monophosphate synthase MoaC -
  NAG75_RS05905 moaD 1081848..1082105 (+) 258 WP_005461535.1 molybdopterin synthase sulfur carrier subunit -
  NAG75_RS05910 moaE 1082107..1082562 (+) 456 WP_005461480.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52245.82 Da        Isoelectric Point: 6.4244

>NTDB_id=693204 NAG75_RS05875 WP_264402561.1 1076732..1078135(+) (luxO) [Vibrio parahaemolyticus strain GL-601]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
STLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLEMLPPPLNRPLDRPS
VSKLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=693204 NAG75_RS05875 WP_264402561.1 1076732..1078135(+) (luxO) [Vibrio parahaemolyticus strain GL-601]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTCTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCATCGAA
TTCCAGATCTTATTCTTCTCGATCTTCGTCTGCCTGATATGACGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAT
CCAGATGTGCCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGTAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGCTGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCAGCCATACCTAAAGACTTAATTGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGT
AGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACTTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
GTTCCAGAAAGTGGGCTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGGCGTTTCCGCGAAGACTTATACTACCGTTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGATCGCTTTAACAGTTATGAGTGGCCGGGTAACGTCCGACAACTACAAAACGTATTGCGTAATA
TCGTGGTGCTTAACAACGGCAAAGAAATTACGTTAGAAATGTTGCCACCGCCGCTGAATCGACCATTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACTGTTTCAGAGATCATGCCGCTATGGATGACAGAGAAAATGGCGATTGA
ACAAGCGATTGAGGCGTGTGACGGTAATATTCCAAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.83

95.931

0.833
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368