Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   NAG75_RS03920 Genome accession   NZ_CP097873
Coordinates   644078..644692 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain GL-601     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 639078..649692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG75_RS03910 aceF 640368..642254 (+) 1887 WP_140120717.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  NAG75_RS03915 lpdA 642523..643950 (+) 1428 WP_021823119.1 dihydrolipoyl dehydrogenase -
  NAG75_RS03920 opaR 644078..644692 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  NAG75_RS03925 hpt 645011..645541 (+) 531 WP_005462585.1 hypoxanthine phosphoribosyltransferase -
  NAG75_RS03930 can 645617..646285 (-) 669 WP_005462578.1 carbonate dehydratase -
  NAG75_RS03935 - 646569..648239 (+) 1671 WP_025792850.1 SulP family inorganic anion transporter -
  NAG75_RS03940 - 648491..649408 (+) 918 WP_017447686.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=693202 NAG75_RS03920 WP_005479697.1 644078..644692(-) (opaR) [Vibrio parahaemolyticus strain GL-601]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=693202 NAG75_RS03920 WP_005479697.1 644078..644692(-) (opaR) [Vibrio parahaemolyticus strain GL-601]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701