Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CKCBHOJB_RS04825 Genome accession   NZ_CP097870
Coordinates   1054535..1055941 (+) Length   468 a.a.
NCBI ID   WP_281050882.1    Uniprot ID   -
Organism   Thauera sp. GDN1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1049535..1060941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKCBHOJB_RS04805 (CKCBHOJB_00964) mtnA 1049993..1051063 (-) 1071 WP_281050878.1 S-methyl-5-thioribose-1-phosphate isomerase -
  CKCBHOJB_RS04810 (CKCBHOJB_00965) - 1051268..1052425 (-) 1158 WP_281050879.1 pyridoxal phosphate-dependent aminotransferase -
  CKCBHOJB_RS04815 (CKCBHOJB_00966) - 1052711..1052950 (+) 240 WP_281050880.1 PP0621 family protein -
  CKCBHOJB_RS04820 (CKCBHOJB_00967) - 1052964..1054538 (+) 1575 WP_281050881.1 ATP-binding protein -
  CKCBHOJB_RS04825 (CKCBHOJB_00968) pilR 1054535..1055941 (+) 1407 WP_281050882.1 sigma-54 dependent transcriptional regulator Regulator
  CKCBHOJB_RS04830 (CKCBHOJB_00969) - 1056027..1057436 (+) 1410 WP_281050883.1 MBL fold metallo-hydrolase -
  CKCBHOJB_RS04835 (CKCBHOJB_00970) - 1057689..1058297 (+) 609 WP_281051619.1 XrtA/PEP-CTERM system exopolysaccharide export protein -
  CKCBHOJB_RS04840 (CKCBHOJB_00971) - 1058380..1059924 (+) 1545 WP_281050884.1 XrtA system polysaccharide chain length determinant -
  CKCBHOJB_RS04845 (CKCBHOJB_00972) - 1059938..1060900 (+) 963 WP_281050885.1 XrtA-associated tyrosine autokinase -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 51327.73 Da        Isoelectric Point: 5.9085

>NTDB_id=693169 CKCBHOJB_RS04825 WP_281050882.1 1054535..1055941(+) (pilR) [Thauera sp. GDN1]
MTFVERRNRPQSIDVLVVDDEDDIRELLELSLMRMGLACDTAGSVQAARELLAQRRYRLCLTDMRLPDGDGLELVELIQG
CQPGLPVAVITAFGSIETAIRALKLGAFDFVTKPVELKALRELVSHALKLKDGAGEAPVPGTTRALIGHSPAFVQLRGQA
EKLARNQAPVFIHGESGTGKEVIARYIHGLGARATGPFVPVNCGAISPELMESEFFGHRKGSFTGAGTDKEGLFQAANGG
TLFLDEIGELPLAMQVKLLRAIQERAVRPVGAHAEEPVDVRILSASHQDLGRLVAEGRFRQDLFFRINVITLRVPPLRER
REDIPELATHILARLAAREGGAPRRLSPDALQALQRHAFPGNVRELENLLERACALCEGSEIGAADIELYPEQTASGWLT
DSLAGSYYDAPQPEPAAGEEAVEAPDEAERLRIIRALEQTRWNRSAAARNLGMTLRQLRYRLQKWGME

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=693169 CKCBHOJB_RS04825 WP_281050882.1 1054535..1055941(+) (pilR) [Thauera sp. GDN1]
ATGACTTTCGTCGAACGCCGCAACCGCCCGCAATCCATCGACGTCCTGGTCGTCGACGACGAGGACGACATCCGCGAACT
GCTCGAGCTGTCGCTGATGCGCATGGGGCTCGCCTGCGACACCGCCGGCTCGGTGCAGGCCGCGCGCGAGCTGCTCGCCC
AGCGCCGCTACCGCCTGTGCCTGACCGACATGCGCCTGCCCGATGGCGACGGCCTGGAGCTGGTCGAGCTCATCCAGGGC
TGCCAGCCCGGCCTGCCGGTGGCCGTGATCACCGCCTTCGGCAGCATCGAGACCGCGATCCGCGCGCTCAAGCTCGGCGC
CTTCGACTTCGTCACCAAGCCGGTCGAGCTCAAGGCCCTGCGCGAGCTCGTCAGCCATGCGCTCAAGCTCAAGGACGGCG
CCGGCGAGGCCCCCGTGCCCGGCACCACGCGTGCCCTCATCGGCCATTCGCCGGCCTTCGTGCAGCTGCGCGGCCAGGCC
GAGAAGCTCGCGCGCAACCAGGCGCCGGTGTTCATCCACGGCGAATCGGGCACCGGCAAGGAGGTCATCGCGCGCTACAT
CCACGGCCTCGGTGCGCGCGCGACCGGCCCCTTCGTGCCGGTGAACTGCGGTGCGATCTCGCCCGAGCTGATGGAGAGCG
AGTTCTTCGGCCATCGCAAGGGCAGCTTCACCGGCGCCGGCACCGACAAGGAAGGCCTGTTCCAGGCCGCCAACGGCGGC
ACGCTGTTCCTCGACGAGATCGGCGAGCTGCCGCTGGCCATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGCGCGCGGT
GCGCCCTGTCGGCGCCCATGCCGAGGAGCCGGTCGACGTGCGCATCCTGTCGGCCTCGCACCAGGATCTCGGCCGCCTGG
TCGCCGAGGGGCGCTTCCGCCAGGATCTGTTCTTCCGCATCAACGTCATCACCCTGCGCGTGCCGCCGCTGCGCGAACGT
CGCGAGGACATCCCCGAGCTCGCCACCCACATCCTGGCGCGCCTGGCCGCGCGCGAGGGGGGCGCGCCGCGCCGCCTGTC
GCCCGACGCGCTGCAGGCGCTGCAGCGCCACGCCTTCCCGGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAGCGCGCCT
GCGCGCTGTGCGAGGGCAGCGAGATCGGCGCCGCCGACATCGAGCTCTACCCGGAGCAGACCGCGTCGGGCTGGCTCACC
GACAGCCTGGCCGGCAGCTACTACGACGCGCCGCAGCCGGAGCCCGCCGCCGGCGAGGAGGCGGTCGAGGCGCCGGACGA
GGCCGAGCGCCTGCGCATCATCCGCGCGCTCGAGCAGACGCGCTGGAACCGCTCCGCCGCCGCGCGCAACCTCGGCATGA
CGCTGCGCCAGCTGCGCTACCGGCTGCAGAAGTGGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(146-312)

Response regulator receiver domain (Response_reg)

(15-124)

Bacterial regulatory protein, Fis family (HTH_8)

(426-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

59.692

97.009

0.579
  pilR Acinetobacter baumannii strain A118

48.807

98.504

0.481