Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   M8C01_RS15850 Genome accession   NZ_CP097858
Coordinates   3433334..3434350 (-) Length   338 a.a.
NCBI ID   WP_045412016.1    Uniprot ID   -
Organism   Vibrio owensii strain GL-605     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3428334..3439350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8C01_RS15825 aroK 3429190..3429708 (-) 519 WP_005438434.1 shikimate kinase AroK -
  M8C01_RS15830 pilQ 3429898..3431646 (-) 1749 WP_045412013.1 type IV pilus secretin PilQ Machinery gene
  M8C01_RS15835 pilP 3431681..3432196 (-) 516 WP_005438430.1 pilus assembly protein PilP Machinery gene
  M8C01_RS15840 pilO 3432186..3432779 (-) 594 WP_009705519.1 type 4a pilus biogenesis protein PilO Machinery gene
  M8C01_RS15845 pilN 3432772..3433350 (-) 579 WP_264403872.1 PilN domain-containing protein Machinery gene
  M8C01_RS15850 pilM 3433334..3434350 (-) 1017 WP_045412016.1 type IV pilus biogenesis protein PilM Machinery gene
  M8C01_RS15855 - 3434529..3437099 (+) 2571 WP_038896735.1 penicillin-binding protein 1A -
  M8C01_RS15860 oxyR 3437166..3438074 (-) 909 WP_033005806.1 DNA-binding transcriptional regulator OxyR -
  M8C01_RS15865 - 3438250..3438978 (+) 729 WP_005438421.1 redoxin family protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 38002.31 Da        Isoelectric Point: 6.0152

>NTDB_id=693128 M8C01_RS15850 WP_045412016.1 3433334..3434350(-) (pilM) [Vibrio owensii strain GL-605]
MDKLLVTGIDIGHNSLKAVVLKPNGNSYALLGYKEIILKERIVAENNTINHQEIVKTLKEMRKELPIRARKVAISVPDNA
VISKKLQIEQNLEESEKEFAVMQAFAHQSPFPVEELSLDFVKVDTDEQMGGTESYQVFATRREVVESRVETLTKSGLKTV
LVDVHSQSLGHIWKLTAERFPEKNKHCLLDIGAMSSSFTMFTEQGELFHKEFPCGTRTTNDLSQHDPLSDDIQTATEEFN
RQMVERVKRQMQLYTSFNGSQDIKGIWLSGEGAATPMLAEELSSQLALECELLNPLSLFEMKVSKRKRRAADWQHFTAAA
GLAVRGIQWLGGDDAASH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=693128 M8C01_RS15850 WP_045412016.1 3433334..3434350(-) (pilM) [Vibrio owensii strain GL-605]
ATGGATAAGCTATTAGTTACGGGCATAGATATTGGCCATAACAGCCTCAAAGCCGTGGTACTTAAACCCAATGGCAACAG
TTACGCTTTATTGGGTTACAAAGAAATAATACTTAAGGAACGTATTGTCGCTGAAAATAACACCATAAATCATCAAGAAA
TTGTAAAGACCCTTAAAGAGATGAGAAAAGAGCTCCCAATTCGAGCTAGAAAGGTCGCAATTTCGGTTCCAGACAATGCC
GTGATCAGCAAAAAGCTACAAATAGAGCAGAACCTAGAAGAAAGCGAAAAGGAATTTGCGGTGATGCAAGCCTTTGCGCA
TCAGTCTCCCTTTCCGGTTGAAGAGCTCAGCCTCGACTTTGTAAAGGTTGATACGGATGAGCAGATGGGCGGCACAGAGA
GCTACCAAGTGTTTGCAACACGCAGAGAGGTGGTGGAAAGCCGAGTGGAGACATTAACAAAGTCTGGCCTAAAAACCGTG
CTGGTGGATGTGCACTCACAAAGTCTTGGTCATATATGGAAGCTAACCGCAGAACGTTTTCCAGAAAAGAATAAGCATTG
CTTGTTGGACATTGGTGCGATGAGCAGCTCTTTCACTATGTTTACCGAGCAAGGAGAGTTATTCCATAAGGAGTTTCCTT
GCGGTACCCGCACAACAAACGATTTGTCTCAACACGATCCACTCAGTGACGATATTCAAACCGCAACTGAAGAGTTCAAT
CGACAAATGGTTGAACGTGTTAAGCGTCAGATGCAGCTCTACACCTCGTTCAATGGTAGCCAAGATATCAAAGGCATTTG
GCTTTCCGGAGAGGGGGCAGCTACGCCAATGTTAGCTGAGGAACTATCAAGTCAATTGGCACTAGAGTGTGAACTTCTCA
ATCCTCTTAGTTTGTTTGAAATGAAAGTCTCTAAACGTAAACGCCGAGCTGCAGATTGGCAGCATTTCACGGCAGCTGCA
GGTTTAGCGGTACGCGGTATTCAGTGGTTGGGAGGTGACGATGCTGCATCACATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

89.053

100

0.891
  pilM Vibrio cholerae strain A1552

47.989

100

0.494