Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   M8C01_RS15840 Genome accession   NZ_CP097858
Coordinates   3432186..3432779 (-) Length   197 a.a.
NCBI ID   WP_009705519.1    Uniprot ID   A0AAP9K910
Organism   Vibrio owensii strain GL-605     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3427186..3437779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8C01_RS15820 aroB 3428058..3429158 (-) 1101 WP_005438436.1 3-dehydroquinate synthase -
  M8C01_RS15825 aroK 3429190..3429708 (-) 519 WP_005438434.1 shikimate kinase AroK -
  M8C01_RS15830 pilQ 3429898..3431646 (-) 1749 WP_045412013.1 type IV pilus secretin PilQ Machinery gene
  M8C01_RS15835 pilP 3431681..3432196 (-) 516 WP_005438430.1 pilus assembly protein PilP Machinery gene
  M8C01_RS15840 pilO 3432186..3432779 (-) 594 WP_009705519.1 type 4a pilus biogenesis protein PilO Machinery gene
  M8C01_RS15845 pilN 3432772..3433350 (-) 579 WP_264403872.1 PilN domain-containing protein Machinery gene
  M8C01_RS15850 pilM 3433334..3434350 (-) 1017 WP_045412016.1 type IV pilus biogenesis protein PilM Machinery gene
  M8C01_RS15855 - 3434529..3437099 (+) 2571 WP_038896735.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23042.65 Da        Isoelectric Point: 5.1105

>NTDB_id=693126 M8C01_RS15840 WP_009705519.1 3432186..3432779(-) (pilO) [Vibrio owensii strain GL-605]
MVNWQDLEMDEIAEWPLVPQLVVLLMLVLLIQGFGYWFYLKPEQARLDNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVKANTYQFKPEEKKDAK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=693126 M8C01_RS15840 WP_009705519.1 3432186..3432779(-) (pilO) [Vibrio owensii strain GL-605]
ATGGTTAATTGGCAAGACCTTGAAATGGATGAAATCGCCGAATGGCCACTGGTGCCGCAGTTAGTGGTTCTCTTAATGCT
CGTGTTGCTAATTCAAGGTTTCGGTTACTGGTTCTATTTAAAGCCAGAGCAAGCGCGTTTGGACAATTTGATTCAAGAAG
AGCAAACCTTAAAAGTTGCGCTGAGAATCAAGGCCAATAAAGTGGCGGCTTTGCCTCAACTGCAATCACAACTCGATGAG
CTCACCACTCGCTACGAACTGCTACTGCAACAACTACCTGCGCAAAAAGAGCTGGCCACCATGCTGGCTTCGGTGAATGA
ACTGGGCATCGATAACAAACTGACATTTACCCGCATTGACTGGGGGGAGAAACAATCAGAGCACTTTCTTTATCGTCTGC
CGCTGAATATTGAACTCACTGGAGACTTTCATGATATCGGCCGTTTCTCTCAAGCCATCGCCACATTGCCTCGCATCATC
ACGTTTAAAGACGTGACTTGGCAACGAGTGAGTCAAGAAAGTGAAACTTTGCACTTCCGTGTAAAAGCGAATACCTACCA
GTTCAAACCAGAGGAAAAGAAAGATGCGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(47-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

93.158

96.447

0.898
  pilO Vibrio cholerae strain A1552

72.251

96.954

0.701