Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   M8C01_RS14495 Genome accession   NZ_CP097858
Coordinates   3167314..3167931 (+) Length   205 a.a.
NCBI ID   WP_009707563.1    Uniprot ID   -
Organism   Vibrio owensii strain GL-605     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3162314..3172931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8C01_RS14475 - 3162597..3163514 (-) 918 WP_005439357.1 ABC transporter ATP-binding protein -
  M8C01_RS14480 - 3163752..3165422 (-) 1671 WP_020196604.1 SulP family inorganic anion transporter -
  M8C01_RS14485 can 3165706..3166374 (+) 669 WP_005439355.1 carbonate dehydratase -
  M8C01_RS14490 hpt 3166463..3166993 (-) 531 WP_005439354.1 hypoxanthine phosphoribosyltransferase -
  M8C01_RS14495 opaR 3167314..3167931 (+) 618 WP_009707563.1 transcriptional regulator OpaR Regulator
  M8C01_RS14500 - 3167928..3168245 (-) 318 WP_264403748.1 hypothetical protein -
  M8C01_RS14505 lpdA 3168263..3169693 (-) 1431 WP_005438019.1 dihydrolipoyl dehydrogenase -
  M8C01_RS14510 aceF 3169936..3171861 (-) 1926 WP_264403751.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23710.99 Da        Isoelectric Point: 6.2211

>NTDB_id=693110 M8C01_RS14495 WP_009707563.1 3167314..3167931(+) (opaR) [Vibrio owensii strain GL-605]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELSTLVSAYLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=693110 M8C01_RS14495 WP_009707563.1 3167314..3167931(+) (opaR) [Vibrio owensii strain GL-605]
ATGGACTCAATAGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTGATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGTCGTGGTGGTCACGCAGATATTGCAGAGATCGCTCAAGTTTCTGTTGCGACAGTAT
TTAACTACTTCCCTACTCGTGAAGACTTAGTGGATGAAGTTCTGAACCACGTTGTCCGTCAATTCTCGAACTTCTTGTCT
GATAACATCGACTTAGACATCCATGCACGCGAAAACATCGCCAACATCACTAATGCAATGATTGAGCTAGTAAGCCAAGA
TTGCCATTGGCTGAAGGTTTGGTTCGAATGGAGCGCATCGACACGTGATGAAGTATGGCCGTTATTCGTGACCACAAACC
GCACAAACCAACTATTGGTGCAAAACATGTTCATCAAAGCGATCGAACGTGGTGAAGTTTGTGACCAACATGAACCGGAA
CATTTGGCGAATCTGTTCCACGGTATTTGCTACTCTATCTTCGTACAAGCGAACCGCTCTAAGAGCGAAGCTGAGCTATC
AACGCTCGTTAGCGCTTACCTAGATATGCTGTGCATCTACAACCGTGAACATCACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

96.078

99.512

0.956
  hapR Vibrio cholerae C6706

71.717

96.585

0.693
  hapR Vibrio cholerae strain A1552

71.717

96.585

0.693