Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   MDRSPN_RS02400 Genome accession   NZ_AP018391
Coordinates   453093..453824 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain MDRSPN001     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 448093..458824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MDRSPN_RS02375 (MDRSPN_00442) dnaK 448110..449933 (+) 1824 WP_000034662.1 molecular chaperone DnaK -
  MDRSPN_RS02380 (MDRSPN_00443) - 449946..450299 (+) 354 WP_000115730.1 hypothetical protein -
  MDRSPN_RS02385 (MDRSPN_00444) dnaJ 450504..451640 (+) 1137 WP_001066299.1 molecular chaperone DnaJ -
  MDRSPN_RS10825 - 451962..452156 (-) 195 WP_001808905.1 hypothetical protein -
  MDRSPN_RS02390 (MDRSPN_00445) - 452318..452605 (-) 288 WP_000777760.1 hypothetical protein -
  MDRSPN_RS02395 (MDRSPN_00446) - 452615..453025 (-) 411 WP_001278301.1 HIT family protein -
  MDRSPN_RS02400 (MDRSPN_00447) pptA 453093..453824 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  MDRSPN_RS02405 (MDRSPN_00448) - 453821..454870 (+) 1050 WP_000653752.1 ABC transporter permease -
  MDRSPN_RS02410 (MDRSPN_00449) - 455038..455367 (-) 330 WP_000132575.1 hypothetical protein -
  MDRSPN_RS02415 (MDRSPN_00450) - 455643..455981 (+) 339 WP_000682122.1 LytTR family DNA-binding domain-containing protein -
  MDRSPN_RS02420 (MDRSPN_00451) comE/blpR 455986..456723 (+) 738 WP_001219126.1 response regulator transcription factor Regulator
  MDRSPN_RS02425 (MDRSPN_00452) - 456736..458076 (+) 1341 WP_000275284.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=69302 MDRSPN_RS02400 WP_000889923.1 453093..453824(+) (pptA) [Streptococcus pneumoniae strain MDRSPN001]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=69302 MDRSPN_RS02400 WP_000889923.1 453093..453824(+) (pptA) [Streptococcus pneumoniae strain MDRSPN001]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAAAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment