Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   M8779_RS10270 Genome accession   NZ_CP097846
Coordinates   1960681..1961076 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain AT159     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1955681..1966076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8779_RS10265 (M8779_10260) - 1960460..1960579 (+) 120 Protein_2002 competence protein ComE -
  M8779_RS10270 (M8779_10265) comE 1960681..1961076 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  M8779_RS10275 (M8779_10270) - 1961485..1961934 (-) 450 WP_047951827.1 transposase -
  M8779_RS10280 (M8779_10275) dnaJ 1962068..1963189 (+) 1122 WP_003690173.1 molecular chaperone DnaJ -
  M8779_RS10285 (M8779_10280) - 1963384..1965402 (+) 2019 WP_047924189.1 oligopeptide transporter, OPT family -
  M8779_RS10290 (M8779_10285) rfbC 1965446..1966003 (-) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=693011 M8779_RS10270 WP_003703428.1 1960681..1961076(+) (comE) [Neisseria gonorrhoeae strain AT159]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=693011 M8779_RS10270 WP_003703428.1 1960681..1961076(+) (comE) [Neisseria gonorrhoeae strain AT159]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1