Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   M8779_RS00390 Genome accession   NZ_CP097846
Coordinates   75896..76204 (-) Length   102 a.a.
NCBI ID   WP_269460796.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain AT159     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 70896..81204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8779_RS00360 (M8779_00360) pilE 71957..72457 (-) 501 WP_252295645.1 pilin Machinery gene
  M8779_RS00365 (M8779_00365) - 72828..72971 (-) 144 WP_003691943.1 hypothetical protein -
  M8779_RS00370 (M8779_00370) - 73436..73759 (-) 324 Protein_73 pilin -
  M8779_RS00375 (M8779_00375) - 73725..74177 (-) 453 Protein_74 pilin -
  M8779_RS00380 (M8779_00380) lpxC 74306..75229 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  M8779_RS00390 (M8779_00390) pilE 75896..76204 (-) 309 WP_269460796.1 pilin Machinery gene
  M8779_RS00395 (M8779_00395) - 76261..76611 (-) 351 Protein_77 pilin -
  M8779_RS00400 (M8779_00400) - 76652..77002 (-) 351 Protein_78 pilin -
  M8779_RS00405 (M8779_00405) - 77043..77429 (-) 387 Protein_79 pilin -
  M8779_RS00410 (M8779_00410) - 77547..78179 (-) 633 WP_269460797.1 pilin -
  M8779_RS00415 (M8779_00415) - 78403..78528 (+) 126 Protein_81 IS110 family transposase -
  M8779_RS00420 (M8779_00420) - 78837..79213 (+) 377 Protein_82 transposase -
  M8779_RS00425 (M8779_00425) - 79412..80032 (+) 621 WP_003696151.1 fused MFS/spermidine synthase -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 10944.34 Da        Isoelectric Point: 9.1386

>NTDB_id=692968 M8779_RS00390 WP_269460796.1 75896..76204(-) (pilE) [Neisseria gonorrhoeae strain AT159]
MASASKIIGKYVKQVEVKNGVVTAQMASTGVNKEIQDKKLSLWAKREDGSVKWFCGQPVTRTEANAKAGTDDVAKADTTG
KDKEIDTKHLPSTCRDESSAGT

Nucleotide


Download         Length: 309 bp        

>NTDB_id=692968 M8779_RS00390 WP_269460796.1 75896..76204(-) (pilE) [Neisseria gonorrhoeae strain AT159]
GTGGCATCCGCTTCAAAAATCATAGGCAAATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTTACCGCCCAAATGGC
TTCAACCGGCGTAAACAAAGAAATCCAAGACAAAAAACTCTCCCTGTGGGCCAAGCGTGAAGACGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTACGCGCACCGAAGCCAACGCCAAAGCCGGCACCGACGACGTCGCCAAAGCCGACACCACCGGC
AAAGACAAAGAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTACGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(4-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

75

98.039

0.735
  pilE Neisseria gonorrhoeae MS11

70.213

92.157

0.647