Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   M9H69_RS03080 Genome accession   NZ_CP097843
Coordinates   564923..566155 (+) Length   410 a.a.
NCBI ID   WP_250315876.1    Uniprot ID   -
Organism   Streptococcus oralis strain HP01     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 559923..571155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS03045 (M9H69_03045) - 560298..560471 (+) 174 WP_250315871.1 hypothetical protein -
  M9H69_RS03050 (M9H69_03050) galE 560595..561614 (+) 1020 WP_250315872.1 UDP-glucose 4-epimerase GalE -
  M9H69_RS03055 (M9H69_03055) - 561598..562569 (+) 972 WP_250315873.1 glycosyltransferase family 2 protein -
  M9H69_RS03060 (M9H69_03060) - 562657..562860 (-) 204 WP_250315874.1 ferredoxin -
  M9H69_RS03065 (M9H69_03065) - 562906..563412 (+) 507 WP_049549902.1 SAG1386/EF1546 family surface-associated protein -
  M9H69_RS03070 (M9H69_03070) cmk 563422..564096 (+) 675 WP_000849413.1 (d)CMP kinase -
  M9H69_RS03075 (M9H69_03075) - 564215..564721 (+) 507 WP_250315875.1 dihydrofolate reductase -
  M9H69_RS03080 (M9H69_03080) clpX 564923..566155 (+) 1233 WP_250315876.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  M9H69_RS03085 (M9H69_03085) yihA 566164..566751 (+) 588 WP_020900580.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  M9H69_RS03090 (M9H69_03090) - 566761..567141 (+) 381 WP_250315877.1 RidA family protein -
  M9H69_RS03095 (M9H69_03095) rapZ 567193..568083 (+) 891 WP_250315878.1 RNase adapter RapZ -
  M9H69_RS03100 (M9H69_03100) - 568080..569057 (+) 978 WP_250315879.1 YvcK family protein -
  M9H69_RS03105 (M9H69_03105) whiA 569054..569965 (+) 912 WP_250315880.1 DNA-binding protein WhiA -
  M9H69_RS03110 (M9H69_03110) - 569998..570966 (-) 969 WP_250315881.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45714.32 Da        Isoelectric Point: 4.4902

>NTDB_id=692920 M9H69_RS03080 WP_250315876.1 564923..566155(+) (clpX) [Streptococcus oralis strain HP01]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALREIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTEKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=692920 M9H69_RS03080 WP_250315876.1 564923..566155(+) (clpX) [Streptococcus oralis strain HP01]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAGAGCCAAGAAGAAGTAAAGAAAATAAT
CGCTGGGAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATCATTCGGGAGGAGTTGGCTGAGGAAG
TCTTGGCAGACTTGTCTGAAGTGCCAAAACCAATCGAGCTCCTCAATATCTTGAACCACTATGTGATTGGTCAGGATCGT
GCCAAACGTGCCTTGGCAGTAGCTGTATACAACCACTACAAACGCATCAATTTCCATGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTGATGATTGGCCCAACGGGTTCTGGGAAAACTTTCTTGGCCCAGACCTTGGCTA
AGAGCTTGAACGTGCCTTTTGCGATTGCAGATGCGACAGCTCTTACTGAGGCTGGGTATGTGGGTGAGGACGTGGAAAAT
ATTCTCCTCAAACTCTTGCAGGCTGCTGACTTTAACATCGAACGTGCAGAACGTGGGATTATCTACGTTGATGAAATTGA
CAAGATTGCCAAGAAGAGCGAGAACGTGTCGATCACACGTGACGTTTCTGGTGAAGGGGTGCAACAAGCCCTTCTTAAGA
TTATCGAGGGAACTGTAGCCAGCGTACCGCCTCAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAAGTGGACACC
AAGAATATCCTCTTTATCGTGGGTGGTGCCTTTGATGGCATCGAAGAAATCGTCAAACAACGTCTGGGGGAAAAAGTCAT
CGGTTTTGGCCAAAATAACAAGGCGATTGATGAGAACAGCTCTTACATGCAAGAAATCATCGCAGAAGATATTCAAAAAT
TCGGGATTATTCCTGAGTTGATTGGACGCTTGCCTGTCTTTGCAGCTCTTGAGCAATTGACGGTCGATGACTTGGTTCGC
ATCCTGAAAGAGCCAAGAAATGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGATGACGTTGAGTTGGAATTTGA
CGACGAAGCCCTGCGAGAAATCGCCAATAAGGCCATTGAACGGAAGACAGGGGCTCGTGGTCTTCGCTCCATCATCGAAG
AAACCATGCTAGATGTCATGTTTGAAGTACCAAGTCAGGAAAATGTGAAATTGGTCCGCATCACAAAAGAAGCTGTCGAT
GGAACGGAAAAACCAATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.829

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.711

98.049

0.566