Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   EP180_RS11390 Genome accession   NZ_AP018385
Coordinates   1935525..1935920 (-) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FC498     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1930525..1940920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EP180_RS11365 (NgFC498_01988) rfbC 1930600..1931157 (+) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  EP180_RS11370 (NgFC498_01989) - 1931201..1933219 (-) 2019 WP_003690255.1 OPT family oligopeptide transporter -
  EP180_RS11375 (NgFC498_01990) dnaJ 1933414..1934535 (-) 1122 WP_003690173.1 molecular chaperone DnaJ -
  EP180_RS11380 (NgFC498_01991) - 1934669..1934998 (+) 330 Protein_1958 transposase -
  EP180_RS11390 (NgFC498_01992) comE 1935525..1935920 (-) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  EP180_RS14760 - 1936025..1936141 (-) 117 Protein_1960 competence protein ComE -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=69284 EP180_RS11390 WP_003703428.1 1935525..1935920(-) (comE) [Neisseria gonorrhoeae strain FC498]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=69284 EP180_RS11390 WP_003703428.1 1935525..1935920(-) (comE) [Neisseria gonorrhoeae strain FC498]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1

Multiple sequence alignment