Detailed information NTG0069279

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EP180_RS09905
• Genome accession: NZ_AP018385
• Coordinates: 1685392..1686252 (+)
• Length: 286 a.a.
• NCBI ID: WP_003689814.1
• Uniprot ID: A0AA44U9R8
• Organism: Neisseria gonorrhoeae strain FC498
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1680392..1691252

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EP180_RS09885 (NgFC498_01737)	dapD	1680902..1681723 (-)	822	WP_003689804.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-
EP180_RS09890 (NgFC498_01738)	pgi	1681933..1683576 (-)	1644	WP_003689806.1	glucose-6-phosphate isomerase	-
EP180_RS09900 (NgFC498_01739)	pilG	1684086..1685318 (+)	1233	WP_003689811.1	type 4 pilus assembly protein PilG	Machinery gene
EP180_RS09905 (NgFC498_01740)	pilD	1685392..1686252 (+)	861	WP_003689814.1	prepilin peptidase	Machinery gene
EP180_RS09910 (NgFC498_01741)	coaE	1686249..1686881 (+)	633	WP_003689816.1	dephospho-CoA kinase	-
EP180_RS09915 (NgFC498_01742)	-	1686874..1687083 (+)	210	WP_003696096.1	DNA gyrase inhibitor YacG	-
EP180_RS09920 (NgFC498_01743)	pilF	1687169..1688845 (-)	1677	WP_003689817.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EP180_RS09935 (NgFC498_01745)	-	1689183..1689629 (-)	447	WP_003689818.1	DUF441 domain-containing protein	-
EP180_RS09940 (NgFC498_01746)	-	1689633..1690607 (-)	975	WP_003689819.1	polyprenyl synthetase family protein	-
EP180_RS09950 (NgFC498_01747)	rplU	1690831..1691139 (+)	309	WP_003691838.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31332.34 Da
• Isoelectric Point: 8.9561

>NTDB_id=69279 EP180_RS09905 WP_003689814.1 1685392..1686252(+) (pilD) [Neisseria gonorrhoeae strain FC498]
MSDLSVLSPFAVPLAAVLGLLVGSFLNVVIYRVPVMMERGWTVFAKEHLNLPLTDDESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYSSLWLLCAVYKLLTGKTGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGRHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVR

Nucleotide

• Length: 861 bp

>NTDB_id=69279 EP180_RS09905 WP_003689814.1 1685392..1686252(+) (pilD) [Neisseria gonorrhoeae strain FC498]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCAGTTTTGGGGCTGCTGGTCGGCAGCTTCCTGAA
TGTCGTCATTTACCGCGTACCCGTTATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAACATTTAAACCTGCCGCTGA
CCGACGATGAAAGCCGTACCTTCAACCTGATGAAGCCGGATTCCTGCTGTCCCAAATGCCGTGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGTTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTCGCCTGGCAATACGGCTGGTCTTGGATTACGCTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACATTACCC
TTGATCTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATAGTTCATTATGGCTCTTATGTGCAGTGTATAAACTGCTCACAGGAAAAACCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCTCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCGGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	100	100	1
pilD	Vibrio cholerae strain A1552	44.792	100	0.451
pilD	Vibrio campbellii strain DS40M4	45.652	96.503	0.441
pilD	Acinetobacter baumannii D1279779	47.727	92.308	0.441
pilD	Acinetobacter nosocomialis M2	47.727	92.308	0.441