Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   M9410_RS02005 Genome accession   NZ_CP097799
Coordinates   422450..422995 (+) Length   181 a.a.
NCBI ID   WP_005758192.1    Uniprot ID   -
Organism   Pasteurella multocida strain 39639     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 417450..427995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9410_RS01980 (M9410_01980) - 417878..418807 (+) 930 WP_005725108.1 phosphatidate cytidylyltransferase -
  M9410_RS01985 (M9410_01985) mog 418833..419411 (+) 579 WP_005725110.1 molybdopterin adenylyltransferase -
  M9410_RS01990 (M9410_01990) glnB 419456..419794 (+) 339 WP_005725112.1 nitrogen regulatory protein P-II -
  M9410_RS01995 (M9410_01995) - 419795..421048 (+) 1254 WP_005755688.1 AI-2E family transporter -
  M9410_RS02000 (M9410_02000) - 421227..422411 (+) 1185 WP_005752447.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  M9410_RS02005 (M9410_02005) pilF/pilF2 422450..422995 (+) 546 WP_005758192.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  M9410_RS02010 (M9410_02010) - 423118..424074 (+) 957 WP_005725132.1 RodZ family helix-turn-helix domain-containing protein -
  M9410_RS02015 (M9410_02015) ispG 424101..425204 (+) 1104 WP_005719572.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  M9410_RS02020 (M9410_02020) hisS 425234..426505 (+) 1272 WP_005758195.1 histidine--tRNA ligase -
  M9410_RS02025 (M9410_02025) - 426524..427135 (+) 612 WP_005758197.1 YfgM family protein -
  M9410_RS02030 (M9410_02030) - 427347..427784 (+) 438 WP_005758199.1 isoprenylcysteine carboxylmethyltransferase family protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20858.43 Da        Isoelectric Point: 8.1524

>NTDB_id=692681 M9410_RS02005 WP_005758192.1 422450..422995(+) (pilF/pilF2) [Pasteurella multocida strain 39639]
MNRTFRFGIASIFSLLLCACVSQESNKTFDSHEAAKARIELGLGYLSQHDFARAKQNFDKALSHAPNYYLSHAVLAYLYQ
KQGHLDLARHAYEKAIKLDKNQGDVLNNYGTFLCQQGEFEQAYKQFSQALNAPHYYQHADTYENLVWCASFAKDAVRYQQ
NLQHLTQFDPSRAKKFPPHIE

Nucleotide


Download         Length: 546 bp        

>NTDB_id=692681 M9410_RS02005 WP_005758192.1 422450..422995(+) (pilF/pilF2) [Pasteurella multocida strain 39639]
ATGAACCGTACTTTTCGATTTGGGATCGCGAGCATTTTTTCTCTTTTGCTTTGTGCTTGTGTGAGTCAAGAAAGTAACAA
AACGTTTGATTCACATGAGGCGGCAAAAGCCAGAATTGAATTAGGTTTAGGCTATTTATCTCAGCATGATTTTGCGCGAG
CAAAGCAAAATTTTGATAAAGCTTTATCCCATGCCCCAAATTACTATTTATCTCATGCTGTCTTAGCGTATCTCTACCAA
AAACAAGGTCATCTTGATTTAGCCCGTCACGCTTATGAAAAGGCGATAAAATTAGATAAAAATCAAGGCGATGTATTAAA
TAATTATGGTACCTTTTTATGCCAACAAGGTGAGTTTGAACAAGCTTACAAACAATTTTCTCAAGCATTAAATGCCCCAC
ATTATTATCAACACGCCGATACTTATGAAAATTTGGTTTGGTGTGCGTCTTTTGCCAAAGACGCTGTCCGTTATCAACAA
AATTTGCAACATTTAACGCAGTTTGATCCCAGTAGAGCAAAAAAATTTCCGCCACATATTGAGTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_17)

(91-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

52.695

92.265

0.486
  pilF Glaesserella parasuis strain SC1401

45.946

100

0.47