Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   MF619_RS14980 Genome accession   NZ_CP097784
Coordinates   2986661..2987305 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain V 3.14     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2981661..2992305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF619_RS14945 (MF619_002978) - 2982846..2983277 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  MF619_RS14950 (MF619_002979) - 2983277..2983618 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  MF619_RS14955 (MF619_002980) - 2983611..2985092 (+) 1482 WP_003152061.1 Na+/H+ antiporter subunit D -
  MF619_RS14960 (MF619_002981) - 2985098..2985574 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  MF619_RS14965 (MF619_002982) - 2985574..2985858 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  MF619_RS14970 (MF619_002983) mnhG 2985842..2986216 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  MF619_RS14975 (MF619_002984) - 2986256..2986639 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  MF619_RS14980 (MF619_002985) comA 2986661..2987305 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  MF619_RS14985 (MF619_002986) comP 2987386..2989380 (-) 1995 WP_250236997.1 ATP-binding protein Regulator
  MF619_RS14990 (MF619_002987) comX 2989400..2989570 (-) 171 WP_003152048.1 competence pheromone ComX Regulator
  MF619_RS14995 (MF619_002988) comQ 2989533..2990465 (-) 933 WP_025650217.1 class 1 isoprenoid biosynthesis enzyme Regulator
  MF619_RS15000 (MF619_002989) degQ 2990650..2990790 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  MF619_RS15005 (MF619_002990) - 2991256..2991597 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=692387 MF619_RS14980 WP_003152052.1 2986661..2987305(-) (comA) [Bacillus velezensis strain V 3.14]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=692387 MF619_RS14980 WP_003152052.1 2986661..2987305(-) (comA) [Bacillus velezensis strain V 3.14]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864