Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   MF621_RS00805 Genome accession   NZ_CP097779
Coordinates   160343..160741 (-) Length   132 a.a.
NCBI ID   WP_014304317.1    Uniprot ID   -
Organism   Bacillus velezensis strain R 4.6     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 155343..165741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF621_RS00770 (MF621_000154) - 156342..156467 (-) 126 Protein_137 hypothetical protein -
  MF621_RS00775 (MF621_000155) - 156620..157822 (+) 1203 WP_032857854.1 GTP-binding protein -
  MF621_RS00780 (MF621_000156) - 157887..159023 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  MF621_RS00785 (MF621_000157) - 159038..159472 (+) 435 WP_003156592.1 RDD family protein -
  MF621_RS00790 (MF621_000158) - 159590..159865 (+) 276 WP_369719109.1 YckD family protein -
  MF621_RS00795 (MF621_000159) - 159969..160085 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  MF621_RS00800 (MF621_000160) - 160084..160302 (+) 219 Protein_143 family 1 glycosylhydrolase -
  MF621_RS00805 (MF621_000161) nin/comJ 160343..160741 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  MF621_RS00810 (MF621_000162) nucA/comI 160763..161200 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  MF621_RS00815 (MF621_000163) hxlB 161559..162116 (-) 558 WP_003156587.1 6-phospho-3-hexuloisomerase -
  MF621_RS00820 (MF621_000164) hxlA 162113..162748 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  MF621_RS00825 (MF621_000165) - 162980..163342 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15049.01 Da        Isoelectric Point: 4.6564

>NTDB_id=692254 MF621_RS00805 WP_014304317.1 160343..160741(-) (nin/comJ) [Bacillus velezensis strain R 4.6]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVFRLNTSEPVLSYEKKATVPF
EAVKDGIEIESVMSKRLFFNIPKGRYSLTCYSVPAEISDLHADTYIIDADAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=692254 MF621_RS00805 WP_014304317.1 160343..160741(-) (nin/comJ) [Bacillus velezensis strain R 4.6]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCGTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTCGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCTTCAGGCTTAACACAAGTGAACCGGTACTATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTAATGTCAAAGCGGCTTTTCTTTAATATTCCAAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGACGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

77.519

97.727

0.758