Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilL   Type   Machinery gene
Locus tag   EP179_RS02745 Genome accession   NZ_AP018381
Coordinates   450046..450519 (+) Length   157 a.a.
NCBI ID   WP_025455870.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FC460     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 445046..455519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EP179_RS02720 (NgFC460_00452) dnaB 445608..447014 (+) 1407 WP_047917169.1 replicative DNA helicase -
  EP179_RS02725 (NgFC460_00453) pilH 447169..447834 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EP179_RS02730 (NgFC460_00454) pilV 447866..448477 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  EP179_RS02735 (NgFC460_00455) pilJ 448474..449454 (+) 981 WP_010951046.1 PilW family protein Machinery gene
  EP179_RS02740 (NgFC460_00456) pilK 449433..450044 (+) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EP179_RS02745 (NgFC460_00457) pilL 450046..450519 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  EP179_RS02750 (NgFC460_00458) - 450589..450897 (-) 309 WP_010951048.1 AzlD family protein -
  EP179_RS13535 - 450894..451601 (-) 708 Protein_462 AzlC family ABC transporter permease -
  EP179_RS02760 (NgFC460_00460) dut 451767..452219 (+) 453 WP_103195211.1 dUTP diphosphatase -
  EP179_RS02765 (NgFC460_00461) dapC 452297..453484 (+) 1188 WP_047949582.1 succinyldiaminopimelate transaminase -
  EP179_RS02770 (NgFC460_00462) yaaA 453795..454574 (+) 780 WP_003706583.1 peroxide stress protein YaaA -

Sequence


Protein


Download         Length: 157 a.a.        Molecular weight: 17555.36 Da        Isoelectric Point: 9.4067

>NTDB_id=69217 EP179_RS02745 WP_025455870.1 450046..450519(+) (pilL) [Neisseria gonorrhoeae strain FC460]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDILKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDAEKPRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRDATSAQVYLETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=69217 EP179_RS02745 WP_025455870.1 450046..450519(+) (pilL) [Neisseria gonorrhoeae strain FC460]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATATCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATGCGGAAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCA
CTTCTGCCCAGGTCTATTTGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

100

100

1

  pilX Neisseria meningitidis 8013

85.987

100

0.86


Multiple sequence alignment