Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D8S83_RS11370 Genome accession   NZ_AP018349
Coordinates   2233719..2234114 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GN1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2228719..2239114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8S83_RS11345 thiE 2229318..2229959 (-) 642 WP_000483165.1 thiamine phosphate synthase -
  D8S83_RS11350 thiM 2229961..2230752 (-) 792 WP_020977448.1 hydroxyethylthiazole kinase -
  D8S83_RS11355 thiD 2230736..2231566 (-) 831 WP_000594962.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  D8S83_RS11360 tenA 2231559..2232248 (-) 690 WP_000396067.1 thiaminase II -
  D8S83_RS11365 sceD 2232635..2233330 (-) 696 WP_000751996.1 lytic transglycosylase SceD -
  D8S83_RS11370 ssb 2233719..2234114 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  D8S83_RS11375 - 2234308..2234748 (+) 441 WP_000846746.1 YwpF-like family protein -
  D8S83_RS11380 fabZ 2234805..2235245 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  D8S83_RS11385 murA 2235279..2236544 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  D8S83_RS11390 - 2236655..2236888 (-) 234 WP_000384520.1 DUF1146 family protein -
  D8S83_RS11395 - 2237020..2237097 (-) 78 Protein_2125 hypothetical protein -
  D8S83_RS11405 - 2237484..2237888 (-) 405 WP_020977449.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=69142 D8S83_RS11370 WP_000932694.1 2233719..2234114(-) (ssb) [Staphylococcus aureus strain GN1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=69142 D8S83_RS11370 WP_000932694.1 2233719..2234114(-) (ssb) [Staphylococcus aureus strain GN1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment