Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D8S83_RS06525 Genome accession   NZ_AP018349
Coordinates   1311906..1312778 (+) Length   290 a.a.
NCBI ID   WP_000620183.1    Uniprot ID   A0A6B1RG35
Organism   Staphylococcus aureus strain GN1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1306906..1317778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8S83_RS06500 - 1307051..1307818 (+) 768 WP_000176399.1 ribonuclease HII -
  D8S83_RS06505 sucC 1307927..1309093 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  D8S83_RS06510 sucD 1309115..1310023 (+) 909 WP_020977190.1 succinate--CoA ligase subunit alpha -
  D8S83_RS06515 - 1310310..1310462 (+) 153 Protein_1228 cell wall hydrolase -
  D8S83_RS06520 fmhC 1310490..1311734 (+) 1245 WP_020977192.1 FemA/FemB family glycyltransferase FmhC -
  D8S83_RS06525 dprA 1311906..1312778 (+) 873 WP_000620183.1 DNA-processing protein DprA Machinery gene
  D8S83_RS06530 topA 1312951..1315026 (+) 2076 WP_001557331.1 type I DNA topoisomerase -
  D8S83_RS06535 trmFO 1315182..1316489 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33532.95 Da        Isoelectric Point: 9.5191

>NTDB_id=69118 D8S83_RS06525 WP_000620183.1 1311906..1312778(+) (dprA) [Staphylococcus aureus strain GN1]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNINLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQIHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=69118 D8S83_RS06525 WP_000620183.1 1311906..1312778(+) (dprA) [Staphylococcus aureus strain GN1]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
AAATTTAATAAATAATATGCATCATTTGGCAGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAATACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B1RG35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.276

100

0.983
  dprA Staphylococcus aureus N315

97.931

100

0.979

Multiple sequence alignment