Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   D8S83_RS03030 Genome accession   NZ_AP018349
Coordinates   627513..628082 (+) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GN1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 622513..633082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8S83_RS03005 cysE 623726..624373 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  D8S83_RS03010 cysS 624357..625757 (+) 1401 WP_020977020.1 cysteine--tRNA ligase -
  D8S83_RS03015 - 625750..626154 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  D8S83_RS03020 rlmB 626162..626908 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  D8S83_RS03025 - 626908..627432 (+) 525 WP_000664738.1 NYN domain-containing protein -
  D8S83_RS03030 sigH 627513..628082 (+) 570 WP_000872876.1 RNA polymerase sigma factor Regulator
  D8S83_RS03035 rpmG 628197..628340 (+) 144 WP_120173159.1 50S ribosomal protein L33 -
  D8S83_RS03040 secE 628396..628578 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  D8S83_RS03045 nusG 628591..629139 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  D8S83_RS03050 rplK 629320..629742 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  D8S83_RS03055 rplA 629950..630642 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  D8S83_RS03065 rplJ 630914..631414 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  D8S83_RS03070 rplL 631457..631825 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  D8S83_RS03075 - 632000..632608 (+) 609 WP_000020299.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=69111 D8S83_RS03030 WP_000872876.1 627513..628082(+) (sigH) [Staphylococcus aureus strain GN1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=69111 D8S83_RS03030 WP_000872876.1 627513..628082(+) (sigH) [Staphylococcus aureus strain GN1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984

Multiple sequence alignment