Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   M8962_RS06215 Genome accession   NZ_CP097591
Coordinates   1368602..1369291 (+) Length   229 a.a.
NCBI ID   WP_197197403.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA0188     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1363602..1374291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8962_RS06190 degS 1363886..1365049 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  M8962_RS06195 degU 1365126..1365815 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  M8962_RS06200 - 1365913..1366761 (+) 849 WP_003151387.1 DegV family protein -
  M8962_RS06205 comFA 1366869..1368254 (+) 1386 WP_012118573.1 DEAD/DEAH box helicase Machinery gene
  M8962_RS06210 - 1368312..1368596 (+) 285 WP_007407481.1 competence protein ComFB -
  M8962_RS06215 comFC 1368602..1369291 (+) 690 WP_197197403.1 double zinc ribbon domain-containing protein Machinery gene
  M8962_RS06220 - 1369365..1369784 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  M8962_RS06225 flgM 1369854..1370120 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  M8962_RS06230 - 1370135..1370617 (+) 483 WP_003151394.1 flagellar protein FlgN -
  M8962_RS06235 flgK 1370633..1372150 (+) 1518 WP_012118570.1 flagellar hook-associated protein FlgK -
  M8962_RS06240 flgL 1372162..1373079 (+) 918 WP_012118569.1 flagellar hook-associated protein FlgL -
  M8962_RS06245 - 1373170..1373739 (+) 570 WP_023357152.1 DUF6470 family protein -
  M8962_RS06250 fliW 1373769..1374200 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25201.86 Da        Isoelectric Point: 8.4871

>NTDB_id=690771 M8962_RS06215 WP_197197403.1 1368602..1369291(+) (comFC) [Bacillus velezensis strain UA0188]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSKFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSATGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=690771 M8962_RS06215 WP_197197403.1 1368602..1369291(+) (comFC) [Bacillus velezensis strain UA0188]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCAAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CACAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594