Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   STO1_RS06870 Genome accession   NZ_AP018338
Coordinates   1358329..1359561 (-) Length   410 a.a.
NCBI ID   WP_096422561.1    Uniprot ID   A0A224A7I4
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1353329..1364561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS06840 (STO1_013300) - 1353518..1354486 (+) 969 WP_000081025.1 NAD(P)/FAD-dependent oxidoreductase -
  STO1_RS06845 (STO1_013310) whiA 1354519..1355430 (-) 912 WP_000011267.1 DNA-binding protein WhiA -
  STO1_RS06850 (STO1_013320) - 1355427..1356404 (-) 978 WP_001231134.1 YvcK family protein -
  STO1_RS06855 (STO1_013330) rapZ 1356401..1357291 (-) 891 WP_000163047.1 RNase adapter RapZ -
  STO1_RS06860 (STO1_013340) - 1357343..1357723 (-) 381 WP_001140421.1 RidA family protein -
  STO1_RS06865 (STO1_013350) yihA 1357733..1358320 (-) 588 WP_000405197.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  STO1_RS06870 (STO1_013360) clpX 1358329..1359561 (-) 1233 WP_096422561.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  STO1_RS06880 (STO1_013370) - 1359763..1360269 (-) 507 WP_000162313.1 dihydrofolate reductase -
  STO1_RS06885 (STO1_013380) cmk 1360388..1361062 (-) 675 WP_000849409.1 (d)CMP kinase -
  STO1_RS06890 (STO1_013390) - 1361072..1361578 (-) 507 WP_001040923.1 SAG1386/EF1546 family surface-associated protein -
  STO1_RS06895 - 1361624..1361827 (+) 204 WP_162278922.1 ferredoxin -
  STO1_RS06900 (STO1_013400) - 1361910..1362872 (-) 963 WP_172843647.1 glycosyltransferase family 2 protein -
  STO1_RS06905 (STO1_013410) galE 1362877..1363896 (-) 1020 WP_096422563.1 UDP-glucose 4-epimerase GalE -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45672.24 Da        Isoelectric Point: 4.4874

>NTDB_id=69070 STO1_RS06870 WP_096422561.1 1358329..1359561(-) (clpX) [Streptococcus oralis subsp. tigurinus strain osk_001]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTADDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALREIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=69070 STO1_RS06870 WP_096422561.1 1358329..1359561(-) (clpX) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTAAAGAAAATAAT
AGCTGGGAACAACGCTTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATCATTCGGGAGGAGTTGGCCGAAGAAG
TTTTGGCAGACTTGTCTGAAGTGCCAAAACCAATCGAGCTCCTCAATATCTTGAACCACTATGTGATTGGTCAGGATCGT
GCCAAACGTGCCTTGGCAGTGGCTGTATACAATCACTATAAACGCATCAATTTCCACGATACGCGTGAAGAGTCAGAAGA
TGTGGATTTGCAGAAGTCAAACATCTTGATGATTGGCCCAACTGGTTCTGGGAAAACTTTTTTGGCCCAGACCTTGGCTA
AGAGCTTGAACGTACCTTTTGCTATTGCAGATGCGACAGCTCTTACTGAGGCTGGGTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTCAAACTCTTGCAGGCTGCTGACTTTAACATCGAACGTGCAGAACGTGGGATTATCTACGTTGATGAAATAGA
CAAGATTGCCAAAAAGAGCGAGAATGTGTCTATCACACGTGATGTTTCGGGTGAAGGGGTGCAACAAGCCCTTCTCAAGA
TTATCGAGGGAACTGTTGCCAGCGTACCGCCTCAAGGCGGACGTAAACATCCACAACAAGAGATGATTCAGGTAGATACC
AAGAATATCCTCTTCATTGTGGGTGGTGCCTTTGATGGCATCGAAGAAATTGTTAAACAGCGTTTGGGAGAAAAAGTCAT
CGGCTTTGGTCAAAACAACAAGGCGATTGACGAAAACAGCTCATACATGCAAGAAATCATCGCAGAAGACATTCAAAAAT
TCGGGATTATCCCTGAGTTGATTGGACGCTTGCCTGTCTTTGCTGCTCTTGAACAATTGACGGCCGATGACTTGGTTCGC
ATCTTGAAAGAACCAAGAAACGCCTTGGTGAAACAATACCAAACCTTGCTTTCTTATGATGACGTTGAGTTGGAATTTGA
CGACGAAGCCCTGCGAGAAATCGCTAATAAAGCCATCGAACGCAAAACGGGTGCGCGTGGTCTTCGCTCCATCATCGAAG
AAACCATGCTAGATGTTATGTTTGAAGTACCGAGTCAGGAAAATGTGAAATTGGTCCGCATCACTAAAGAAGCTGTTGAT
GGAACGGATAAACCGATCCTGGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A224A7I4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.829

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.711

98.049

0.566

Multiple sequence alignment