Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OTB22_RS08695 Genome accession   NZ_CP113267
Coordinates   1712787..1713383 (+) Length   198 a.a.
NCBI ID   WP_000248787.1    Uniprot ID   H8ZYP5
Organism   Streptococcus pneumoniae strain BC2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1707787..1718383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTB22_RS08670 (OTB22_08675) mapZ 1708745..1710139 (-) 1395 WP_023396578.1 cell division site-positioning protein MapZ -
  OTB22_RS08675 (OTB22_08680) - 1710152..1711309 (-) 1158 WP_000711393.1 class I SAM-dependent RNA methyltransferase -
  OTB22_RS08685 (OTB22_08690) gpsB 1711795..1712124 (-) 330 WP_000146522.1 cell division regulator GpsB -
  OTB22_RS08690 (OTB22_08695) - 1712194..1712721 (-) 528 WP_000179547.1 DUF1273 domain-containing protein -
  OTB22_RS08695 (OTB22_08700) recU 1712787..1713383 (+) 597 WP_000248787.1 Holliday junction resolvase RecU Machinery gene
  OTB22_RS08700 (OTB22_08705) pbp1a 1713380..1715539 (+) 2160 WP_268217907.1 penicillin-binding protein PBP1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23130.53 Da        Isoelectric Point: 9.8515

>NTDB_id=690667 OTB22_RS08695 WP_000248787.1 1712787..1713383(+) (recU) [Streptococcus pneumoniae strain BC2]
MVNYPHKVSSQKRQTSLSQPKNFANRGMSFEKMINATNDYYLSQGLAVIHKKPTPIQIVQVDYPQRSRAKIVEAYFRQAS
TTDYSGVYNGYYIDFEVKETKQKRAIPMKNFHPHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAFDLIRFYHQDKGQK
SMPLEYIREYGYEIKAGAFPQIPYLNVIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=690667 OTB22_RS08695 WP_000248787.1 1712787..1713383(+) (recU) [Streptococcus pneumoniae strain BC2]
ATGGTCAACTATCCACATAAAGTTTCATCACAAAAAAGACAAACATCTCTTTCTCAACCCAAAAATTTCGCAAATCGAGG
AATGTCTTTTGAAAAGATGATCAATGCTACCAACGACTACTATTTGTCTCAGGGCTTGGCTGTTATACATAAGAAACCAA
CTCCTATTCAAATCGTACAAGTGGACTATCCACAACGAAGTCGTGCCAAGATTGTTGAAGCCTATTTTCGACAAGCTTCA
ACGACGGACTATTCTGGCGTTTATAATGGATATTACATCGACTTTGAAGTCAAGGAAACAAAACAAAAACGTGCGATTCC
GATGAAAAATTTTCATCCACATCAGATTCAGCATATGGAACAAGTCCTTGCCCAACAAGGAATCTGCTTTGTCCTTCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTGCCGGCATTCGATTTGATTCGCTTCTATCATCAAGATAAGGGACAAAAA
TCAATGCCACTTGAATATATTCGAGAATATGGATATGAAATCAAGGCTGGTGCCTTCCCTCAAATTCCTTATCTCAATGT
TATCAAAGAACATTTATTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H8ZYP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.49