Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   M8961_RS16205 Genome accession   NZ_CP097588
Coordinates   3270986..3271384 (+) Length   132 a.a.
NCBI ID   WP_007609299.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA0323     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3265986..3276384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8961_RS16185 - 3268386..3268748 (-) 363 WP_012116770.1 helix-turn-helix domain-containing protein -
  M8961_RS16190 hxlA 3268980..3269615 (+) 636 WP_012116769.1 3-hexulose-6-phosphate synthase -
  M8961_RS16195 hxlB 3269612..3270169 (+) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  M8961_RS16200 nucA/comI 3270528..3270965 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  M8961_RS16205 nin/comJ 3270986..3271384 (+) 399 WP_007609299.1 competence protein ComJ Regulator
  M8961_RS16210 - 3271425..3272861 (-) 1437 WP_012116768.1 family 1 glycosylhydrolase -
  M8961_RS16215 - 3272965..3273288 (-) 324 WP_007409357.1 YckD family protein -
  M8961_RS16220 - 3273361..3273795 (-) 435 WP_012116767.1 RDD family protein -
  M8961_RS16225 - 3273810..3274946 (-) 1137 WP_012116766.1 zinc-dependent alcohol dehydrogenase -
  M8961_RS16230 - 3275011..3276213 (-) 1203 WP_012116765.1 GTP-binding protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14977.03 Da        Isoelectric Point: 4.9712

>NTDB_id=690594 M8961_RS16205 WP_007609299.1 3270986..3271384(+) (nin/comJ) [Bacillus velezensis strain UA0323]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=690594 M8961_RS16205 WP_007609299.1 3270986..3271384(+) (nin/comJ) [Bacillus velezensis strain UA0323]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGGGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTTCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCCGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758