Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   M8961_RS14785 Genome accession   NZ_CP097588
Coordinates   2985139..2985828 (-) Length   229 a.a.
NCBI ID   WP_197197403.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA0323     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2980139..2990828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8961_RS14750 fliW 2980230..2980661 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  M8961_RS14755 - 2980691..2981260 (-) 570 WP_023357152.1 DUF6470 family protein -
  M8961_RS14760 flgL 2981351..2982268 (-) 918 WP_012118569.1 flagellar hook-associated protein FlgL -
  M8961_RS14765 flgK 2982280..2983797 (-) 1518 WP_012118570.1 flagellar hook-associated protein FlgK -
  M8961_RS14770 - 2983813..2984295 (-) 483 WP_003151394.1 flagellar protein FlgN -
  M8961_RS14775 flgM 2984310..2984576 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  M8961_RS14780 - 2984646..2985065 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  M8961_RS14785 comFC 2985139..2985828 (-) 690 WP_197197403.1 double zinc ribbon domain-containing protein Machinery gene
  M8961_RS14790 - 2985834..2986118 (-) 285 WP_007407481.1 competence protein ComFB -
  M8961_RS14795 comFA 2986176..2987561 (-) 1386 WP_012118573.1 DEAD/DEAH box helicase Machinery gene
  M8961_RS14800 - 2987669..2988517 (-) 849 WP_003151387.1 DegV family protein -
  M8961_RS14805 degU 2988615..2989304 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  M8961_RS14810 degS 2989381..2990544 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25201.86 Da        Isoelectric Point: 8.4871

>NTDB_id=690583 M8961_RS14785 WP_197197403.1 2985139..2985828(-) (comFC) [Bacillus velezensis strain UA0323]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSKFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSATGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=690583 M8961_RS14785 WP_197197403.1 2985139..2985828(-) (comFC) [Bacillus velezensis strain UA0323]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCAAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CACAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594