Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   M8964_RS05325 Genome accession   NZ_CP097585
Coordinates   1046292..1046729 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA1365     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1041292..1051729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8964_RS05300 - 1042311..1043447 (+) 1137 WP_012116766.1 zinc-dependent alcohol dehydrogenase -
  M8964_RS05305 - 1043462..1043896 (+) 435 WP_012116767.1 RDD family protein -
  M8964_RS05310 - 1043969..1044292 (+) 324 WP_007409357.1 YckD family protein -
  M8964_RS05315 - 1044396..1045832 (+) 1437 WP_012116768.1 family 1 glycosylhydrolase -
  M8964_RS05320 nin/comJ 1045873..1046271 (-) 399 WP_007609299.1 competence protein ComJ Regulator
  M8964_RS05325 nucA/comI 1046292..1046729 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  M8964_RS05330 hxlB 1047088..1047645 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  M8964_RS05335 hxlA 1047642..1048277 (-) 636 WP_012116769.1 3-hexulose-6-phosphate synthase -
  M8964_RS05340 - 1048509..1048871 (+) 363 WP_012116770.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=690394 M8964_RS05325 WP_003156588.1 1046292..1046729(-) (nucA/comI) [Bacillus velezensis strain UA1365]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=690394 M8964_RS05325 WP_003156588.1 1046292..1046729(-) (nucA/comI) [Bacillus velezensis strain UA1365]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641