Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   OUY06_RS08030 Genome accession   NZ_CP113247
Coordinates   1582803..1583477 (+) Length   224 a.a.
NCBI ID   WP_085391508.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain CNSC001WB     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1577803..1588477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OUY06_RS08010 - 1578137..1578877 (-) 741 WP_035145739.1 MBL fold metallo-hydrolase -
  OUY06_RS08015 - 1579007..1579792 (-) 786 WP_016265492.1 DUF975 family protein -
  OUY06_RS08020 - 1579810..1581909 (-) 2100 WP_061827276.1 ABC transporter permease -
  OUY06_RS08025 - 1581887..1582663 (-) 777 WP_011375145.1 ABC transporter ATP-binding protein -
  OUY06_RS08030 braR 1582803..1583477 (+) 675 WP_085391508.1 response regulator transcription factor Regulator
  OUY06_RS08035 - 1583487..1584554 (+) 1068 WP_016265495.1 HAMP domain-containing histidine kinase -
  OUY06_RS08040 - 1584664..1585830 (+) 1167 WP_141265877.1 hypothetical protein -
  OUY06_RS08045 - 1585864..1587159 (-) 1296 WP_141265878.1 PTS sugar transporter subunit IIC -
  OUY06_RS08050 nrdG 1587406..1587987 (-) 582 WP_016265498.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25977.95 Da        Isoelectric Point: 4.7301

>NTDB_id=690318 OUY06_RS08030 WP_085391508.1 1582803..1583477(+) (braR) [Latilactobacillus sakei strain CNSC001WB]
MFEIMIVEDDPTIANLIAENLEKWQLKAIIHDDFDTIFDRFLTDKPNLVLLDINLPVYDGFYWCRKIREVSKVPIIFISS
RSTNMDMVMSMNMGGDDFVNKPFSMEVLIAKINALLRRTYNYVDQNTDVIEHNGLLINLQSGGAQVGDTVVDLSKNEYKL
LQFLMRQHGQIVSREKLLRALWDDERFVDDNTLTVNINRLRKKIEQAGLEDYIQTKIGQGYIIP

Nucleotide


Download         Length: 675 bp        

>NTDB_id=690318 OUY06_RS08030 WP_085391508.1 1582803..1583477(+) (braR) [Latilactobacillus sakei strain CNSC001WB]
ATGTTTGAAATTATGATTGTTGAAGATGATCCTACAATTGCTAACTTGATTGCTGAGAACTTAGAGAAATGGCAGTTAAA
AGCCATTATCCACGATGATTTCGATACCATTTTTGACCGTTTTTTAACGGATAAACCCAACTTAGTCCTACTAGATATCA
ATTTACCCGTCTATGACGGTTTCTATTGGTGTCGTAAAATTCGTGAAGTGTCTAAAGTGCCAATTATCTTCATCTCTAGC
CGCAGTACTAATATGGATATGGTGATGTCAATGAACATGGGTGGCGATGATTTTGTTAACAAGCCCTTTTCAATGGAAGT
CTTAATCGCTAAAATCAATGCGCTTTTACGCCGGACCTATAACTATGTCGATCAAAATACAGACGTCATCGAACATAACG
GCCTTCTAATTAACTTACAAAGTGGTGGGGCTCAAGTTGGTGATACTGTCGTTGACCTCTCTAAAAATGAATATAAGTTA
CTCCAATTTTTGATGCGCCAACACGGTCAAATTGTCAGTCGTGAAAAACTCCTACGGGCGTTATGGGACGACGAACGTTT
TGTCGATGACAATACATTAACCGTCAATATCAATCGGCTGCGTAAAAAAATCGAACAAGCCGGTCTAGAAGACTATATTC
AAACTAAAATCGGCCAAGGCTACATCATCCCATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.575

97.768

0.455
  vicR Streptococcus mutans UA159

34.914

100

0.362