Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M8249_RS01195 Genome accession   NZ_CP097574
Coordinates   254655..255206 (+) Length   183 a.a.
NCBI ID   WP_002828738.1    Uniprot ID   C5RAY6
Organism   Weissella paramesenteroides strain JL-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 249655..260206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8249_RS01170 (M8249_01160) purR 249784..250632 (+) 849 WP_002828743.1 pur operon repressor -
  M8249_RS01175 (M8249_01165) glmU 250654..252036 (+) 1383 WP_002828742.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  M8249_RS01180 (M8249_01170) - 252161..253147 (+) 987 WP_040760995.1 ribose-phosphate diphosphokinase -
  M8249_RS01185 (M8249_01175) - 253214..254158 (+) 945 WP_277362283.1 nucleoside hydrolase -
  M8249_RS01190 (M8249_01180) rpsF 254285..254584 (+) 300 WP_002828739.1 30S ribosomal protein S6 -
  M8249_RS01195 (M8249_01185) ssb 254655..255206 (+) 552 WP_002828738.1 single-stranded DNA-binding protein Machinery gene
  M8249_RS01200 (M8249_01190) rpsR 255263..255505 (+) 243 WP_002828737.1 30S ribosomal protein S18 -
  M8249_RS01205 (M8249_01195) - 255605..256072 (+) 468 WP_404975112.1 hypothetical protein -
  M8249_RS01210 (M8249_01200) purE 256340..256831 (+) 492 WP_150176799.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  M8249_RS01215 (M8249_01205) purK 256824..257945 (+) 1122 WP_002828733.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  M8249_RS01220 (M8249_01210) purC 257948..258685 (+) 738 WP_150191364.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  M8249_RS01225 (M8249_01215) purS 258687..258950 (+) 264 WP_140837207.1 phosphoribosylformylglycinamidine synthase subunit PurS -
  M8249_RS01230 (M8249_01220) purQ 258947..259633 (+) 687 WP_140837205.1 phosphoribosylformylglycinamidine synthase subunit PurQ -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19776.29 Da        Isoelectric Point: 4.7513

>NTDB_id=690234 M8249_RS01195 WP_002828738.1 254655..255206(+) (ssb) [Weissella paramesenteroides strain JL-5]
MINRVVLVGRLTRDVELRYTTSGAAVGSFTIAVNRQFTNANGERDTDFINAVIWRKSAENFANFTSKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVDNFSLLESRAESEARRSQSGSNNTNNFGGGQQRSQGNFNSSSSQNPFGAPASSGNVFNGGSAN
SQSSNDPFGGGQEIDISDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=690234 M8249_RS01195 WP_002828738.1 254655..255206(+) (ssb) [Weissella paramesenteroides strain JL-5]
ATGATAAATCGTGTTGTTCTGGTTGGTCGTTTGACACGTGATGTTGAATTACGTTATACGACTTCTGGTGCTGCTGTTGG
TTCATTTACAATTGCCGTTAATCGACAATTTACAAATGCTAACGGTGAGCGTGATACTGATTTTATTAATGCTGTCATTT
GGCGTAAGTCAGCAGAAAATTTTGCTAATTTTACATCAAAAGGTTCGTTAGTTGGTATTGAAGGCCGAATTCAAACTCGT
AATTATGAAAATCAACAAGGGCAACGTGTTTATGTCACGGAAGTCGTCGTTGATAACTTCTCATTGTTAGAAAGTCGTGC
TGAAAGTGAAGCACGCCGTTCTCAGAGTGGTTCAAATAATACGAATAATTTTGGTGGTGGACAGCAACGCAGCCAAGGAA
ACTTTAATTCCTCATCATCACAAAACCCATTTGGTGCACCAGCATCTAGTGGTAATGTGTTTAATGGTGGTTCAGCTAAT
TCACAATCATCAAATGATCCTTTCGGTGGTGGTCAAGAGATTGATATCTCTGATGATGACCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C5RAY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.761

100

0.661
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.63

100

0.519