Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M8789_RS10685 Genome accession   NZ_CP097571
Coordinates   2157254..2157649 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V40     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2152254..2162649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8789_RS10660 (M8789_10660) thiE 2152853..2153494 (-) 642 WP_000483148.1 thiamine phosphate synthase -
  M8789_RS10665 (M8789_10665) thiM 2153496..2154287 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  M8789_RS10670 (M8789_10670) thiD 2154271..2155101 (-) 831 WP_250164306.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  M8789_RS10675 (M8789_10675) tenA 2155094..2155783 (-) 690 WP_250164307.1 thiaminase II -
  M8789_RS10680 (M8789_10680) sceD 2156170..2156865 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  M8789_RS10685 (M8789_10685) ssb 2157254..2157649 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  M8789_RS10690 (M8789_10690) - 2157843..2158283 (+) 441 WP_000846746.1 YwpF-like family protein -
  M8789_RS10695 (M8789_10695) fabZ 2158340..2158780 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  M8789_RS10700 (M8789_10700) murA 2158814..2160079 (-) 1266 WP_250164308.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  M8789_RS10705 (M8789_10705) - 2160190..2160423 (-) 234 WP_000384523.1 DUF1146 family protein -
  M8789_RS10710 (M8789_10710) - 2161184..2161588 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=690206 M8789_RS10685 WP_000932694.1 2157254..2157649(-) (ssb) [Staphylococcus aureus strain V40]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=690206 M8789_RS10685 WP_000932694.1 2157254..2157649(-) (ssb) [Staphylococcus aureus strain V40]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992