Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   M8789_RS04410 Genome accession   NZ_CP097571
Coordinates   945147..945716 (-) Length   189 a.a.
NCBI ID   WP_031885550.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V40     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 940147..950716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8789_RS04390 (M8789_04390) - 941650..943008 (+) 1359 WP_000021871.1 TrkH family potassium uptake protein -
  M8789_RS04395 (M8789_04395) - 943147..944658 (+) 1512 WP_250164471.1 bifunctional metallophosphatase/5'-nucleotidase -
  M8789_RS04410 (M8789_04410) comK/comK1 945147..945716 (-) 570 WP_031885550.1 competence protein ComK Regulator
  M8789_RS04415 (M8789_04415) - 945926..946144 (+) 219 WP_000876826.1 IDEAL domain-containing protein -
  M8789_RS04420 (M8789_04420) - 946225..947211 (-) 987 WP_000668817.1 lipoate--protein ligase -
  M8789_RS04425 (M8789_04425) - 947410..947586 (+) 177 WP_000214898.1 YkvS family protein -
  M8789_RS04430 (M8789_04430) - 947601..948203 (+) 603 WP_001033867.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  M8789_RS04435 (M8789_04435) - 948521..948583 (+) 63 WP_228764722.1 hypothetical protein -
  M8789_RS04440 (M8789_04440) - 949218..949502 (+) 285 WP_000790905.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22591.79 Da        Isoelectric Point: 9.6091

>NTDB_id=690180 M8789_RS04410 WP_031885550.1 945147..945716(-) (comK/comK1) [Staphylococcus aureus strain V40]
MYSQNIYVIRKGDMVIRSAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=690180 M8789_RS04410 WP_031885550.1 945147..945716(-) (comK/comK1) [Staphylococcus aureus strain V40]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGATCAGCATTTGATGATGACGATCAAAGAAA
TGGTAGCGAAATAATTCGATTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTCCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTCTTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995