Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C822_RS07765 Genome accession   NZ_CP097561
Coordinates   1537588..1538142 (-) Length   184 a.a.
NCBI ID   WP_004049699.1    Uniprot ID   -
Organism   Ligilactobacillus murinus ASF361     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1532588..1543142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C822_RS07725 (C822_001552) - 1533267..1533980 (-) 714 WP_004048385.1 helix-turn-helix domain-containing protein -
  C822_RS07730 (C822_001553) - 1534101..1534274 (-) 174 WP_004049691.1 hypothetical protein -
  C822_RS07735 (C822_001554) - 1534293..1534424 (-) 132 WP_004049692.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  C822_RS07740 (C822_001555) - 1534601..1535254 (-) 654 WP_191976294.1 LytTR family DNA-binding domain-containing protein -
  C822_RS07745 - 1535386..1535514 (-) 129 Protein_1488 cysteine peptidase family C39 domain-containing protein -
  C822_RS07750 (C822_001556) - 1535850..1536056 (-) 207 WP_004049696.1 hypothetical protein -
  C822_RS07755 (C822_001557) - 1536217..1536747 (+) 531 WP_004049697.1 hypothetical protein -
  C822_RS07760 (C822_001558) rpsR 1537330..1537566 (-) 237 WP_003695889.1 30S ribosomal protein S18 -
  C822_RS07765 (C822_001559) ssb 1537588..1538142 (-) 555 WP_004049699.1 single-stranded DNA-binding protein Machinery gene
  C822_RS07770 (C822_001560) rpsF 1538179..1538469 (-) 291 WP_004049701.1 30S ribosomal protein S6 -
  C822_RS07775 (C822_001561) - 1538810..1539445 (+) 636 WP_004049703.1 NAD(P)H-binding protein -
  C822_RS07780 (C822_001562) gyrA 1539542..1542004 (-) 2463 WP_004049705.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20060.78 Da        Isoelectric Point: 4.6382

>NTDB_id=690155 C822_RS07765 WP_004049699.1 1537588..1538142(-) (ssb) [Ligilactobacillus murinus ASF361]
MINSVVLVGRLTRDPELRYTPSGAAVASFTVAIDRRFTNQQGQREADFINCVMWRKAAENFANFTHKGSLVGIEGRIQTR
SYENQQGQRVYVTEVLAENFSLLESKAESERYRAQHGSSNANVQGSAPSNDMQSSNPFGTPANNQTNDAFGGSGFDSTPN
NSNNAADPFAGGQQIDISDDDLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=690155 C822_RS07765 WP_004049699.1 1537588..1538142(-) (ssb) [Ligilactobacillus murinus ASF361]
TTGATCAATTCAGTTGTTCTAGTAGGTCGCTTGACCCGAGATCCTGAACTGCGCTACACGCCTTCAGGGGCAGCCGTGGC
AAGCTTTACTGTCGCGATCGACCGTCGTTTCACTAACCAACAAGGTCAACGTGAAGCTGATTTCATCAATTGTGTAATGT
GGCGTAAAGCAGCCGAAAACTTTGCTAATTTTACCCACAAAGGTTCCTTAGTAGGGATCGAAGGCCGGATCCAAACCCGT
TCTTATGAAAATCAGCAAGGTCAACGTGTTTATGTTACTGAAGTTTTAGCTGAGAATTTCTCACTTTTGGAATCCAAGGC
TGAATCAGAAAGGTATCGTGCCCAACACGGCAGCAGTAACGCTAATGTGCAAGGTTCAGCTCCTTCAAATGATATGCAGT
CATCTAATCCATTTGGGACTCCAGCAAATAATCAGACAAATGATGCTTTTGGTGGTAGTGGTTTTGATTCCACTCCAAAC
AATAGTAACAATGCGGCTGATCCATTTGCCGGTGGGCAACAGATCGATATCTCAGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.622

100

0.62
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.15

100

0.571