Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   OTU47_RS11545 Genome accession   NZ_CP113115
Coordinates   2201132..2202181 (-) Length   349 a.a.
NCBI ID   WP_050116080.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NP2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 2196132..2207181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU47_RS11515 (OTU47_11515) - 2196296..2197657 (+) 1362 WP_267750037.1 bacteriocin secretion accessory protein -
  OTU47_RS11520 (OTU47_11520) blpC 2197714..2197842 (+) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  OTU47_RS11525 (OTU47_11525) - 2197913..2199253 (-) 1341 WP_001017642.1 sensor histidine kinase -
  OTU47_RS11530 (OTU47_11530) comE/blpR 2199267..2200004 (-) 738 WP_050116081.1 response regulator transcription factor Regulator
  OTU47_RS11535 (OTU47_11535) - 2200009..2200347 (-) 339 WP_047499348.1 LytTR family DNA-binding domain-containing protein -
  OTU47_RS11540 (OTU47_11540) - 2200624..2200935 (+) 312 WP_267750036.1 helicase BlpT -
  OTU47_RS11545 (OTU47_11545) pptB 2201132..2202181 (-) 1050 WP_050116080.1 ABC transporter permease Regulator
  OTU47_RS11550 (OTU47_11550) pptA 2202178..2202909 (-) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  OTU47_RS11555 (OTU47_11555) - 2202977..2203387 (+) 411 WP_001278301.1 HIT family protein -
  OTU47_RS11560 (OTU47_11560) - 2203397..2203684 (+) 288 WP_000777760.1 hypothetical protein -
  OTU47_RS11565 (OTU47_11565) dnaJ 2204064..2205200 (-) 1137 WP_267750035.1 molecular chaperone DnaJ -
  OTU47_RS11570 (OTU47_11570) - 2205405..2205758 (-) 354 WP_000115730.1 hypothetical protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40604.66 Da        Isoelectric Point: 10.0008

>NTDB_id=689852 OTU47_RS11545 WP_050116080.1 2201132..2202181(-) (pptB) [Streptococcus pneumoniae strain NP2]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYLISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSFRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=689852 OTU47_RS11545 WP_050116080.1 2201132..2202181(-) (pptB) [Streptococcus pneumoniae strain NP2]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTTCTCAATGACCA
CTTTGTCTTATTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCCTTGTTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATCTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGTGTCAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTTTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGCTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467