Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   LNQ82_RS09975 Genome accession   NZ_CP097501
Coordinates   1993196..1996744 (-) Length   1182 a.a.
NCBI ID   WP_027021387.1    Uniprot ID   -
Organism   Conchiformibius steedae DSM 2580     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1988196..2001744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNQ82_RS09955 (LNQ82_09955) - 1988876..1990174 (-) 1299 WP_027021383.1 replication-associated recombination protein A -
  LNQ82_RS09960 (LNQ82_09960) - 1990320..1990964 (+) 645 WP_034333015.1 vWA domain-containing protein -
  LNQ82_RS09965 (LNQ82_09965) - 1991064..1992035 (+) 972 WP_027021385.1 kinase -
  LNQ82_RS09970 (LNQ82_09970) - 1992061..1993122 (+) 1062 WP_027021386.1 protein phosphatase 2C domain-containing protein -
  LNQ82_RS09975 (LNQ82_09975) recB 1993196..1996744 (-) 3549 WP_027021387.1 exodeoxyribonuclease V subunit beta Machinery gene
  LNQ82_RS09980 (LNQ82_09980) - 1996741..1997451 (-) 711 WP_027021388.1 rhomboid family intramembrane serine protease -
  LNQ82_RS09985 (LNQ82_09985) - 1997448..1999235 (-) 1788 WP_338025818.1 Na/Pi symporter -
  LNQ82_RS09990 (LNQ82_09990) - 1999309..2000286 (-) 978 WP_027021389.1 malate dehydrogenase -
  LNQ82_RS09995 (LNQ82_09995) - 2000337..2001182 (-) 846 WP_027021390.1 basic amino acid ABC transporter substrate-binding protein -
  LNQ82_RS10000 (LNQ82_10000) - 2001257..2001502 (+) 246 WP_156932206.1 hypothetical protein -

Sequence

Protein


Download         Length: 1182 a.a.        Molecular weight: 131961.35 Da        Isoelectric Point: 6.1342

>NTDB_id=689759 LNQ82_RS09975 WP_027021387.1 1993196..1996744(-) (recB) [Conchiformibius steedae DSM 2580]
MTAPFAPLDVPLNGTNLIEASAGTGKTWNIAALFARLVVLEQADVSQILVVTFTKAATAELKTRLRARLDEALNVLRRCA
DADNPDDALIHECGGDDFLYRLLQRGLQQEGLARLMLRLQAAVSGFDNASVYTIHGFCQRVLQDYAFFCQVPFDIELDEQ
GDRAENLNAAQDFWRGRIADDDVWAQLSYRHRYTPQQALDELESYIARPYLHTPVSAQAQDFAAAQARLAECWQNTVAQL
PEIEAAFWRIHPSLNSNVFRINSFTDKFAMLHQLSTQHAPDAATLRQLLQHKDGHLLFDEGFVREKVKKNALAPEPSDLD
QIQILAELGNAAAEAATAETAAWADMQRQLLTYLHESRRVHKQSHPRRVFDDLLLDVAAALAPDAPHVHTLARALSAQWR
FALIDEFQDTDPLQYAIFRTAFAATDTPLFLVGDPKQAIYGFRGADIFAYLQAAGDAAERHYTLDTNRRNHHALNQGIDA
LFARAQPFVLPQIAYPPVRASREVSRLHGADGNPALAIRWLNEGSETAAVLEARAADWSAAETAALLGGSHTLDTDNGTR
PLLANDIAILVRRRKDGELVRRALKKHGIQSVLLSQNNIFAEAEAEACAALLDFFIQPQQSDTLNFVLAGCLFQYSAADL
QALNDNEHQRSAWTDSAQRSLAHWQQAGIYAALQHFCREHGVETRLLAQRNERSLTNLHQVMELLAAEDELSHSPVSLQQ
WLHRQIESAKQGSGTQAHTLRLESDNDLVKIVTIHASKGLQYPVVICPFIWKAAAAPRSEWHIVHRGSEAVLLHDSQFDE
ADREQQQREHLSEDLRLLYVALTRAEERLYLYAGAYRDGKGSAPAYLLDMPDKTTTNDNACREHWQQFAQTHGLTWYGHQ
APSAVRADWSALARPVYRAAEYAPRRFGFIRHTSFTGLLRQSERLAAARAELPPSDSPADLPDPAPLTPAANAEGIHAFP
HGSNAGICLHSLLENRLFAPADPAADALILERYGFDPEQWCDTVGELLQRTRRTPLLPDHTTLADFSPQQRLTETEFVLH
TDFRLADIRRLLAHSGLSPHIIQAAAALQFQDLHGYLNGAIDLMCRTADGRVLIIDYKSNRLGDHAAAYTPAALDEAVAD
HHYYLQALIYSIAAARYLHSRHALPEQIGVRYLFLRGLDGHSSHSVWSWDIHTADLSPWLIV

Nucleotide


Download         Length: 3549 bp        

>NTDB_id=689759 LNQ82_RS09975 WP_027021387.1 1993196..1996744(-) (recB) [Conchiformibius steedae DSM 2580]
ATGACTGCGCCGTTTGCGCCTTTAGACGTACCGCTTAACGGCACCAACTTAATTGAAGCCTCGGCAGGCACGGGCAAAAC
ATGGAACATCGCTGCGCTGTTTGCGCGGCTGGTGGTGCTGGAACAGGCAGATGTGTCGCAAATTTTGGTGGTGACCTTTA
CCAAAGCCGCCACTGCGGAACTGAAAACCCGTTTGCGGGCGCGTTTGGATGAAGCCTTAAACGTGTTGCGCCGCTGTGCC
GATGCCGATAATCCTGACGATGCCTTGATACACGAATGCGGCGGCGACGATTTTTTATACCGTTTATTGCAACGCGGTTT
GCAACAAGAAGGGCTGGCGCGGCTAATGCTGCGTTTGCAAGCGGCGGTAAGCGGTTTTGACAATGCTTCGGTTTACACCA
TTCACGGTTTTTGCCAACGGGTGTTACAGGATTATGCGTTTTTTTGCCAAGTGCCGTTTGATATTGAATTAGACGAACAA
GGCGACCGCGCTGAAAACTTAAACGCGGCGCAGGATTTTTGGCGCGGGCGCATTGCCGATGACGATGTGTGGGCGCAGTT
AAGCTACCGCCACCGTTACACGCCGCAGCAGGCTTTAGACGAGTTGGAAAGCTATATCGCCCGTCCTTATCTGCACACGC
CCGTATCGGCGCAGGCGCAGGACTTTGCAGCGGCGCAGGCACGGTTGGCGGAATGTTGGCAAAACACGGTGGCGCAGTTG
CCTGAAATTGAAGCGGCATTTTGGCGGATACATCCGTCCCTCAACAGCAATGTGTTCCGCATCAACTCGTTTACCGATAA
ATTTGCTATGTTGCACCAATTATCGACACAGCACGCCCCCGATGCGGCAACTTTACGCCAACTGTTGCAGCACAAAGATG
GTCATTTGCTGTTTGACGAGGGATTTGTTAGAGAAAAAGTCAAAAAAAATGCCCTTGCCCCTGAACCATCTGACCTTGAC
CAAATACAGATTTTGGCAGAACTGGGCAACGCCGCTGCCGAAGCTGCCACAGCGGAAACCGCTGCATGGGCGGATATGCA
GCGGCAGTTGCTGACCTATTTGCACGAAAGCCGCCGCGTACACAAACAAAGCCACCCGCGCCGCGTGTTTGACGACCTTT
TATTAGACGTTGCCGCCGCACTCGCGCCCGATGCGCCACACGTGCACACGCTGGCACGCGCACTGTCGGCGCAATGGCGT
TTTGCGCTGATAGACGAATTTCAAGACACAGACCCGCTGCAATACGCCATTTTCCGCACCGCGTTTGCTGCCACAGATAC
GCCCTTGTTTTTGGTGGGCGACCCCAAACAGGCAATTTACGGTTTTCGCGGCGCGGATATTTTTGCCTATCTGCAAGCAG
CAGGCGATGCCGCCGAACGCCATTACACTTTAGACACCAACCGCCGCAACCATCACGCTTTAAATCAAGGCATTGACGCA
CTGTTTGCGCGGGCGCAGCCGTTTGTGCTGCCGCAAATTGCCTATCCGCCCGTACGCGCCAGCCGCGAAGTTTCGCGTTT
GCACGGTGCAGACGGCAATCCCGCCCTTGCCATACGCTGGCTGAATGAAGGCTCGGAAACCGCCGCCGTGCTGGAAGCCC
GCGCCGCCGATTGGTCTGCCGCCGAAACCGCCGCGCTGCTAGGTGGCAGTCACACCCTAGACACCGACAACGGCACACGT
CCGCTGTTGGCAAACGACATTGCCATATTGGTGCGCCGCCGCAAAGATGGCGAACTGGTGCGCCGTGCCTTAAAAAAACA
CGGTATTCAAAGCGTTTTACTCAGTCAAAACAATATTTTTGCCGAAGCCGAAGCCGAAGCCTGCGCCGCGCTGCTGGATT
TTTTTATCCAACCGCAACAAAGTGATACGCTTAATTTTGTGCTGGCAGGCTGTTTGTTCCAATACAGCGCCGCCGATTTG
CAGGCACTCAACGACAACGAACACCAGCGTTCGGCGTGGACGGATTCGGCACAGCGCAGTTTGGCGCATTGGCAACAAGC
GGGTATTTACGCCGCTTTACAGCATTTTTGCCGCGAACACGGCGTGGAAACCCGTTTGCTGGCGCAGCGCAACGAACGCA
GTCTGACCAATCTGCATCAGGTGATGGAACTTCTCGCCGCCGAAGACGAACTCAGCCACAGCCCCGTGTCGCTGCAACAA
TGGCTGCACCGTCAAATTGAATCTGCCAAACAGGGCAGCGGCACACAAGCCCACACGCTGCGTTTGGAAAGCGACAATGA
TTTGGTCAAAATCGTGACCATTCATGCGTCTAAAGGCTTGCAATATCCTGTGGTGATTTGTCCGTTTATTTGGAAAGCCG
CCGCCGCACCGCGCAGCGAATGGCATATTGTCCACCGTGGCAGCGAAGCGGTGTTGTTGCACGACAGCCAGTTTGACGAA
GCCGACCGCGAACAGCAGCAGCGCGAACACCTGTCGGAAGACCTGCGTTTGCTGTATGTGGCACTTACCCGTGCCGAAGA
ACGGTTGTATTTGTATGCGGGGGCTTATCGGGACGGCAAGGGCAGCGCACCCGCCTATCTGCTGGATATGCCCGACAAAA
CCACCACCAACGACAACGCTTGCCGCGAACATTGGCAGCAGTTCGCGCAAACGCATGGTTTGACATGGTACGGACATCAA
GCCCCTTCCGCCGTCCGCGCCGATTGGTCTGCCCTTGCTCGCCCCGTTTACCGCGCCGCCGAATACGCGCCGCGCCGTTT
CGGTTTTATCCGCCACACCAGCTTTACAGGTTTGCTGCGCCAAAGTGAACGCCTTGCCGCTGCCCGCGCCGAACTGCCGC
CGTCCGACAGCCCCGCCGACCTACCCGACCCCGCTCCCCTTACGCCCGCCGCCAATGCCGAAGGCATACACGCCTTTCCC
CACGGCAGCAATGCGGGGATTTGCCTACACTCCCTGTTGGAAAACAGGCTGTTTGCCCCTGCCGACCCCGCCGCCGATGC
GCTGATACTGGAACGTTACGGTTTTGACCCCGAACAATGGTGCGACACCGTTGGCGAACTGTTGCAGCGCACCCGCCGCA
CCCCGCTGCTGCCTGACCACACCACTTTGGCAGATTTTTCGCCGCAGCAACGTCTAACCGAAACCGAATTCGTTTTACAT
ACCGATTTCCGCCTTGCCGACATCCGCCGTTTGCTGGCTCACAGCGGTTTATCGCCCCATATTATTCAAGCTGCTGCTGC
TTTGCAGTTTCAAGACCTGCACGGTTATTTAAACGGCGCAATTGACCTGATGTGCCGCACCGCAGACGGGCGCGTGCTGA
TTATTGACTACAAATCCAACCGTTTGGGCGACCACGCCGCCGCCTACACACCCGCCGCGCTCGATGAAGCCGTTGCCGAC
CATCATTACTATCTGCAAGCCCTGATTTACAGCATCGCCGCCGCCCGTTATCTGCACAGCCGCCACGCCCTGCCCGAGCA
AATCGGCGTGCGCTACCTGTTTTTGCGCGGGCTGGACGGACACAGCAGCCACAGCGTGTGGTCGTGGGACATCCACACTG
CCGATTTGTCGCCGTGGCTGATCGTATAA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(998-1156)

UvrD-like helicase C-terminal domain (UvrD_C)

(664-831)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(12-456)

UvrD-like helicase C-terminal domain (UvrD_C)

(565-645)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

46.141

100

0.481