Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LNQ82_RS10170 Genome accession   NZ_CP097501
Coordinates   2032641..2033105 (+) Length   154 a.a.
NCBI ID   WP_027021417.1    Uniprot ID   A0AAE9HVZ2
Organism   Conchiformibius steedae DSM 2580     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2027641..2038105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNQ82_RS10140 (LNQ82_10140) - 2027746..2028255 (-) 510 WP_027021412.1 DUF1841 family protein -
  LNQ82_RS10150 (LNQ82_10150) trpE 2028854..2030329 (-) 1476 WP_027021413.1 anthranilate synthase component I -
  LNQ82_RS10155 (LNQ82_10155) panD 2030373..2030756 (-) 384 WP_027021414.1 aspartate 1-decarboxylase -
  LNQ82_RS10160 (LNQ82_10160) cysK 2030841..2031773 (-) 933 WP_027021415.1 cysteine synthase A -
  LNQ82_RS10165 (LNQ82_10165) - 2031934..2032644 (+) 711 WP_027021416.1 phosphoglycolate phosphatase -
  LNQ82_RS10170 (LNQ82_10170) recX 2032641..2033105 (+) 465 WP_027021417.1 recombination regulator RecX Regulator
  LNQ82_RS10175 (LNQ82_10175) brnQ 2033303..2034676 (+) 1374 WP_027021418.1 branched-chain amino acid transport system II carrier protein -
  LNQ82_RS10180 (LNQ82_10180) - 2034716..2035912 (+) 1197 WP_027021419.1 acetate kinase -
  LNQ82_RS10185 (LNQ82_10185) argG 2035984..2037315 (-) 1332 WP_027021420.1 argininosuccinate synthase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17300.65 Da        Isoelectric Point: 10.0817

>NTDB_id=689760 LNQ82_RS10170 WP_027021417.1 2032641..2033105(+) (recX) [Conchiformibius steedae DSM 2580]
MKPLSLKARALAILARREAGREELRRKLAPHAADAAELDALLDELAESGWQSDQRFTEMWVNSKSRKHGRLRLQQDLAAR
GVARETVAEFLPDAEAERLHAVAVLRKKFKAAPADAAERAKQMRFLSYRGFAADTVQAAVRQAWDEDAQDTFFA

Nucleotide


Download         Length: 465 bp        

>NTDB_id=689760 LNQ82_RS10170 WP_027021417.1 2032641..2033105(+) (recX) [Conchiformibius steedae DSM 2580]
GTGAAGCCGCTCAGTTTGAAAGCGCGCGCCTTGGCGATATTGGCGCGGCGCGAAGCAGGACGGGAAGAGTTGCGCCGCAA
ACTCGCGCCCCACGCTGCCGATGCGGCGGAATTGGACGCGCTGTTAGACGAATTGGCGGAATCGGGTTGGCAATCTGACC
AGCGTTTTACTGAAATGTGGGTAAACAGCAAAAGCCGCAAACACGGACGTTTGCGTTTGCAGCAGGATTTGGCGGCGCGT
GGTGTGGCGCGGGAAACGGTGGCGGAATTTCTGCCCGATGCCGAAGCGGAACGCCTGCACGCGGTGGCAGTGTTGCGTAA
AAAATTTAAAGCTGCGCCCGCCGATGCAGCAGAACGCGCCAAACAAATGCGTTTTTTGAGTTATCGCGGTTTTGCCGCAG
ACACGGTGCAGGCGGCTGTGCGGCAAGCGTGGGACGAAGACGCGCAAGATACTTTTTTTGCTTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(29-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

54.605

98.701

0.539