Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   LNQ82_RS00150 Genome accession   NZ_CP097501
Coordinates   23976..24788 (-) Length   270 a.a.
NCBI ID   WP_027021499.1    Uniprot ID   A0AAE9KZS7
Organism   Conchiformibius steedae DSM 2580     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 18976..29788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LNQ82_RS00125 (LNQ82_00125) - 19460..20032 (+) 573 WP_051531983.1 toxin-antitoxin system YwqK family antitoxin -
  LNQ82_RS00130 (LNQ82_00130) - 20060..20902 (+) 843 WP_027021495.1 class II glutamine amidotransferase -
  LNQ82_RS00135 (LNQ82_00135) pxpB 21039..21683 (+) 645 WP_027021496.1 5-oxoprolinase subunit PxpB -
  LNQ82_RS00140 (LNQ82_00140) - 21694..22620 (+) 927 WP_027021497.1 biotin-dependent carboxyltransferase family protein -
  LNQ82_RS00145 (LNQ82_00145) prpF 22782..23963 (-) 1182 WP_027021498.1 2-methylaconitate cis-trans isomerase PrpF -
  LNQ82_RS00150 (LNQ82_00150) comL 23976..24788 (-) 813 WP_027021499.1 outer membrane protein assembly factor BamD Machinery gene
  LNQ82_RS00155 (LNQ82_00155) - 24959..25777 (+) 819 WP_051531984.1 M15 family metallopeptidase -
  LNQ82_RS00160 (LNQ82_00160) grxD 25848..26165 (+) 318 WP_027021500.1 Grx4 family monothiol glutaredoxin -
  LNQ82_RS00165 (LNQ82_00165) apbC 26162..27220 (+) 1059 WP_027021501.1 iron-sulfur cluster carrier protein ApbC -
  LNQ82_RS00170 (LNQ82_00170) - 27329..28180 (+) 852 WP_027021502.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 31155.33 Da        Isoelectric Point: 9.7007

>NTDB_id=689738 LNQ82_RS00150 WP_027021499.1 23976..24788(-) (comL) [Conchiformibius steedae DSM 2580]
MKKHLAVLVFGSLLLSACAGTSQSKIDKDARLTQDWTADSVYSEARKELDAGNYSRAVSLFEVLRSRQPEGRYVEQALME
EAYAHYKNEEPVKALAALARFERHFPASANMDYALYLRGLVQFAEDTSFLNKLSAQDWSDRDPEANRKAFQTFETLVKRF
PNSKYANDARKRMKRLVEALGGHEIAIARYYAKRGAYLAANNRAQSILKQYQNTSYPEEALAIMIFTYNKMNKPQLADDS
RRVLEKSFPQSAYLQKGWVADDMPWWRYWK

Nucleotide


Download         Length: 813 bp        

>NTDB_id=689738 LNQ82_RS00150 WP_027021499.1 23976..24788(-) (comL) [Conchiformibius steedae DSM 2580]
ATGAAAAAACATTTAGCGGTGCTGGTGTTCGGTTCGTTGCTGTTGAGCGCCTGCGCCGGCACCAGCCAAAGTAAAATTGA
CAAAGATGCCCGTTTAACCCAAGACTGGACGGCAGACAGCGTCTATTCCGAAGCCCGCAAAGAATTGGACGCAGGCAATT
ACAGCCGCGCCGTTTCCCTGTTTGAAGTGCTGCGTTCGCGCCAGCCCGAAGGACGTTATGTGGAACAGGCACTGATGGAA
GAAGCCTACGCCCATTACAAAAACGAAGAACCTGTAAAAGCCTTGGCAGCTTTGGCGCGATTTGAACGACACTTTCCCGC
CAGTGCCAATATGGATTACGCCTTGTATTTGCGCGGTTTGGTGCAATTTGCCGAAGATACCTCTTTTTTAAACAAACTTT
CCGCACAAGATTGGTCTGACCGCGACCCCGAAGCCAACCGCAAAGCCTTTCAAACTTTTGAAACGCTGGTGAAACGCTTT
CCCAACAGCAAATACGCTAACGATGCCCGCAAACGCATGAAACGGCTGGTAGAAGCCTTGGGCGGACACGAAATCGCCAT
TGCCCGTTATTACGCCAAACGCGGCGCGTATCTGGCTGCCAACAACCGCGCCCAAAGCATTCTCAAACAATACCAAAACA
CTTCTTATCCCGAAGAAGCCTTGGCGATTATGATTTTTACCTACAACAAAATGAACAAACCGCAATTGGCAGACGACAGC
CGCCGCGTCTTGGAAAAAAGTTTCCCGCAAAGCGCCTACCTGCAAAAAGGGTGGGTGGCAGACGATATGCCGTGGTGGCG
TTATTGGAAATAG

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(37-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

59.851

99.63

0.596
  comL Neisseria gonorrhoeae MS11

59.851

99.63

0.596