Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M8332_RS00040 Genome accession   NZ_CP097478
Coordinates   9252..9776 (+) Length   174 a.a.
NCBI ID   WP_252780114.1    Uniprot ID   -
Organism   Fructilactobacillus ixorae strain Ru20-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4252..14776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8332_RS00030 (M8332_00030) gyrA 6248..8731 (+) 2484 WP_252780832.1 DNA gyrase subunit A -
  M8332_RS00035 (M8332_00035) rpsF 8928..9221 (+) 294 WP_252749544.1 30S ribosomal protein S6 -
  M8332_RS00040 (M8332_00040) ssb 9252..9776 (+) 525 WP_252780114.1 single-stranded DNA-binding protein Machinery gene
  M8332_RS00045 (M8332_00045) rpsR 9818..10069 (+) 252 WP_252749546.1 30S ribosomal protein S18 -
  M8332_RS00050 (M8332_00050) - 10219..12243 (+) 2025 WP_252780115.1 DHH family phosphoesterase -
  M8332_RS00055 (M8332_00055) rplI 12292..12744 (+) 453 WP_252780116.1 50S ribosomal protein L9 -
  M8332_RS00060 (M8332_00060) dnaB 12777..14180 (+) 1404 WP_252780117.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18947.47 Da        Isoelectric Point: 4.5876

>NTDB_id=689668 M8332_RS00040 WP_252780114.1 9252..9776(+) (ssb) [Fructilactobacillus ixorae strain Ru20-1]
MINTVVLTGRLTRDVDLRYTQSGAAVGSFTLAVDRRFTNQNGDREADFVNCVIWRKSAENLANFVHKGSLLGVEGRLQTR
NYENKQGQRVYVTEVVVENFTLLEPRNSGQQGNNAGNQAPQQNPFGTPQSNNFGGQADHNGANQSNPSNGNDNSADPFAG
SGDQIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=689668 M8332_RS00040 WP_252780114.1 9252..9776(+) (ssb) [Fructilactobacillus ixorae strain Ru20-1]
ATGATTAATACCGTGGTCCTAACTGGACGATTAACACGAGATGTCGATTTACGATACACCCAAAGCGGGGCAGCCGTGGG
TTCCTTTACCCTGGCCGTTGATCGCCGCTTCACCAATCAAAATGGTGACCGGGAAGCTGACTTCGTTAATTGTGTTATTT
GGCGGAAATCAGCTGAAAACCTTGCCAACTTCGTTCATAAAGGGTCATTGCTTGGGGTAGAAGGCCGCCTGCAAACGCGG
AACTATGAAAACAAGCAGGGCCAGCGAGTTTATGTAACGGAAGTCGTTGTTGAAAACTTTACTCTGTTGGAACCACGAAA
TAGTGGTCAACAAGGCAACAACGCTGGCAACCAAGCTCCTCAACAAAATCCATTTGGAACTCCGCAATCGAATAACTTCG
GCGGCCAAGCTGATCACAATGGTGCAAACCAGAGTAATCCTAGCAATGGGAATGATAATTCTGCCGATCCGTTTGCCGGT
TCAGGAGACCAAATCGATATTTCCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.295

100

0.655
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.322

100

0.603