Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OTU45_RS00185 Genome accession   NZ_CP113114
Coordinates   32503..33600 (+) Length   365 a.a.
NCBI ID   WP_050118048.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27503..38600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU45_RS00160 (OTU45_00160) pgsA 28024..28569 (-) 546 WP_000712132.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OTU45_RS00165 (OTU45_00165) rodZ 28580..29401 (-) 822 WP_001227958.1 cytoskeleton protein RodZ -
  OTU45_RS00170 (OTU45_00170) yfmH 29443..30726 (-) 1284 WP_000170183.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  OTU45_RS00175 (OTU45_00175) yfmF 30723..31973 (-) 1251 WP_000424272.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  OTU45_RS00180 (OTU45_00180) yaaA 32132..32500 (+) 369 WP_000455903.1 S4 domain-containing protein YaaA -
  OTU45_RS00185 (OTU45_00185) recF 32503..33600 (+) 1098 WP_050118048.1 DNA replication/repair protein RecF Machinery gene
  OTU45_RS00190 (OTU45_00190) guaB 33651..35129 (-) 1479 WP_000073428.1 IMP dehydrogenase -
  OTU45_RS00195 (OTU45_00195) trpS 35281..36306 (-) 1026 WP_000165444.1 tryptophan--tRNA ligase -
  OTU45_RS00200 (OTU45_00200) - 36512..38134 (+) 1623 WP_000958770.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41888.92 Da        Isoelectric Point: 8.1361

>NTDB_id=689626 OTU45_RS00185 WP_050118048.1 32503..33600(+) (recF) [Streptococcus pneumoniae strain NP1]
MWLQHLSLKTFRNYTETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSDQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSKSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=689626 OTU45_RS00185 WP_050118048.1 32503..33600(+) (recF) [Streptococcus pneumoniae strain NP1]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACACAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTACTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGATCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAAATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

98.904

100

0.989
  recF Bacillus subtilis subsp. subtilis str. 168

45.628

100

0.458