Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   M5524_RS26325 Genome accession   NZ_CP097466
Coordinates   5935674..5937086 (-) Length   470 a.a.
NCBI ID   WP_373988977.1    Uniprot ID   -
Organism   Duganella sp. BuS-21     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5930674..5942086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5524_RS26310 (M5524_26265) - 5930699..5931811 (-) 1113 WP_373988974.1 ribonucleotide-diphosphate reductase subunit beta -
  M5524_RS26315 (M5524_26270) - 5931936..5934860 (-) 2925 WP_373988975.1 ribonucleoside-diphosphate reductase subunit alpha -
  M5524_RS26320 (M5524_26275) ampD 5935081..5935677 (-) 597 WP_373988976.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  M5524_RS26325 (M5524_26280) pilR 5935674..5937086 (-) 1413 WP_373988977.1 sigma-54-dependent transcriptional regulator Regulator
  M5524_RS26330 (M5524_26285) - 5937086..5938792 (-) 1707 WP_373992173.1 PAS domain-containing sensor histidine kinase -
  M5524_RS26335 (M5524_26290) - 5938804..5939127 (-) 324 WP_373988978.1 PP0621 family protein -
  M5524_RS26340 (M5524_26295) - 5939124..5939927 (-) 804 WP_373988979.1 inner membrane protein YpjD -
  M5524_RS26345 (M5524_26300) - 5939949..5940746 (-) 798 WP_373988980.1 ABC transporter ATP-binding protein -
  M5524_RS26350 (M5524_26305) - 5940743..5941615 (-) 873 WP_373988981.1 ABC transporter permease -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 50551.12 Da        Isoelectric Point: 5.1324

>NTDB_id=689588 M5524_RS26325 WP_373988977.1 5935674..5937086(-) (pilR) [Duganella sp. BuS-21]
MNVRSPRAPRVLVVDDEADLRELLELTLLKMGLDVDSAATLGEARALLATPEREYQLVLTDMRLPDGLGLELVREITAAY
KNTPVAVVTAFGSADNAVVALKAGAFDYISKPVALDQLRVMVQSALRLNAGPAAGQAPSAAPPASRLKGDSAVIQALRAQ
IARLARSMAPIAINGESGSGKELAAREIHAQSSRAGKPFIAVNCGAIPEALMEAEFFGYRKGAFTGAVDEREGFFQAANG
GTLMLDEVADLPLAMQVKLLRAIQERRVRQIGATAEEPVDVRIISATHKNLAQCVEQGSFRQDLFYRLNVIELSLPPLRD
RLDDLGVLTGAILDRLGTFEHRVVLGAGVLEALRGYSFPGNVRELENILERALAFADDGVIEVGDLALKGARMGEPVPVV
AAAAATQPTQAPASLPASLPDYLNQIERDIILRALAQTQFNRTQAAQLLGISFRQLRYQMQKLNIQEPEA

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=689588 M5524_RS26325 WP_373988977.1 5935674..5937086(-) (pilR) [Duganella sp. BuS-21]
ATGAATGTTCGTTCCCCGCGCGCTCCGCGTGTGCTCGTCGTCGACGACGAGGCCGACCTGCGCGAATTGCTGGAACTGAC
CCTGCTTAAAATGGGCCTGGACGTCGACAGCGCCGCCACGCTGGGCGAGGCGCGCGCGCTGCTGGCCACGCCCGAACGCG
AATATCAGCTGGTGTTGACCGACATGCGCCTGCCCGACGGTCTGGGTCTGGAACTGGTGCGCGAAATCACCGCTGCATAT
AAGAACACGCCGGTGGCGGTGGTTACCGCCTTCGGCAGCGCCGACAACGCCGTGGTCGCGCTCAAGGCCGGCGCTTTCGA
TTACATCTCCAAGCCGGTGGCGCTGGACCAGCTGCGGGTGATGGTGCAATCGGCGCTGCGCCTGAACGCCGGACCGGCGG
CCGGCCAGGCGCCAAGCGCCGCGCCGCCGGCCAGCCGCCTGAAGGGCGACTCCGCCGTGATCCAGGCGCTGCGCGCGCAG
ATCGCCCGGCTGGCGCGCTCGATGGCGCCGATCGCCATCAACGGCGAATCCGGCAGCGGCAAGGAGCTGGCCGCGCGCGA
AATCCACGCCCAAAGCTCGCGCGCCGGCAAGCCCTTCATCGCCGTCAACTGCGGCGCGATTCCTGAAGCGCTGATGGAAG
CGGAGTTCTTCGGCTACCGCAAGGGCGCGTTCACCGGCGCGGTCGATGAGCGCGAAGGTTTCTTCCAGGCGGCCAACGGC
GGCACCCTGATGCTGGACGAAGTGGCCGATCTGCCGTTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGCGGCG
CGTGCGCCAGATCGGCGCCACCGCCGAGGAGCCGGTCGACGTGCGTATTATTAGTGCGACCCACAAGAACCTGGCGCAGT
GCGTGGAGCAGGGCAGCTTTCGCCAGGATTTGTTCTATCGCCTGAACGTGATCGAACTCAGTCTGCCGCCGCTGCGCGAT
CGGCTGGACGACCTCGGCGTGCTGACCGGCGCCATCCTCGACCGCCTCGGCACCTTCGAGCACCGGGTGGTGCTGGGAGC
GGGCGTGCTGGAGGCACTGCGCGGCTACTCCTTTCCCGGCAATGTGCGCGAGCTGGAAAACATCCTCGAACGCGCGCTGG
CGTTTGCCGACGACGGCGTGATCGAAGTGGGCGACCTGGCGCTGAAGGGCGCGCGCATGGGCGAACCTGTGCCTGTCGTC
GCCGCCGCTGCCGCCACGCAGCCGACGCAAGCGCCGGCCAGCCTGCCGGCCAGCCTGCCCGATTACCTGAACCAGATCGA
GCGCGACATCATCCTGCGCGCGCTGGCGCAGACGCAGTTCAACCGCACCCAGGCCGCGCAACTGCTGGGCATCAGCTTCC
GCCAGCTGCGCTACCAGATGCAGAAACTGAATATCCAGGAGCCGGAGGCGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Sigma-54 interaction domain (Sigma54_activat)

(149-313)

Response regulator receiver domain (Response_reg)

(11-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

54.902

97.66

0.536
  pilR Acinetobacter baumannii strain A118

45.064

99.149

0.447