Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   M6G44_RS07380 Genome accession   NZ_CP097377
Coordinates   1586782..1587126 (+) Length   114 a.a.
NCBI ID   WP_005599904.1    Uniprot ID   A3N254
Organism   Actinobacillus pleuropneumoniae strain GD2107     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1581782..1592126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M6G44_RS07355 (M6G44_07355) rpsL 1581915..1582289 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  M6G44_RS07360 (M6G44_07360) rfaC 1582411..1583370 (-) 960 WP_012478545.1 lipopolysaccharide heptosyltransferase RfaC -
  M6G44_RS07365 (M6G44_07365) waaF 1583445..1584482 (-) 1038 WP_005619838.1 lipopolysaccharide heptosyltransferase II -
  M6G44_RS07370 (M6G44_07370) - 1584564..1584968 (-) 405 WP_005599908.1 MliC family protein -
  M6G44_RS07375 (M6G44_07375) - 1585090..1586481 (-) 1392 WP_249849315.1 LysM-like peptidoglycan-binding domain-containing protein -
  M6G44_RS07380 (M6G44_07380) comEA/comE1 1586782..1587126 (+) 345 WP_005599904.1 ComEA family DNA-binding protein Machinery gene
  M6G44_RS07385 (M6G44_07385) asd 1587277..1588167 (+) 891 WP_005602033.1 archaetidylserine decarboxylase -
  M6G44_RS07390 (M6G44_07390) - 1588284..1590647 (+) 2364 WP_005617883.1 DEAD/DEAH box helicase family protein -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12446.30 Da        Isoelectric Point: 10.2030

>NTDB_id=689325 M6G44_RS07380 WP_005599904.1 1586782..1587126(+) (comEA/comE1) [Actinobacillus pleuropneumoniae strain GD2107]
MKKFARFSISFIIALLSADSIAKPNNPPVSEPTPVVQQMTTTNKTADKQNQVNINTADAAEIKSKLVGIGEKKAQAIVDY
RTKNGAFITIEQLTEVSGIGKATLEKNRERITLE

Nucleotide


Download         Length: 345 bp        

>NTDB_id=689325 M6G44_RS07380 WP_005599904.1 1586782..1587126(+) (comEA/comE1) [Actinobacillus pleuropneumoniae strain GD2107]
ATGAAAAAATTTGCCCGATTTAGTATTAGCTTCATCATTGCATTGTTATCCGCCGATTCAATCGCAAAGCCTAATAATCC
GCCCGTTTCCGAACCGACTCCCGTAGTTCAACAAATGACAACAACGAACAAAACTGCCGATAAACAAAATCAAGTGAATA
TCAATACGGCGGATGCAGCGGAAATTAAATCCAAACTGGTGGGAATCGGTGAGAAAAAAGCACAAGCGATTGTCGATTAC
CGCACTAAAAACGGTGCTTTTATTACGATAGAACAACTAACGGAAGTCTCCGGAATCGGTAAAGCGACACTAGAGAAAAA
TCGCGAACGCATCACGTTAGAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(48-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N254

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

58.261

100

0.588
  comE1/comEA Haemophilus influenzae Rd KW20

47.115

91.228

0.43