Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   M5595_RS20255 Genome accession   NZ_CP097376
Coordinates   4305206..4307095 (+) Length   629 a.a.
NCBI ID   WP_038350657.1    Uniprot ID   A0AAC9QVV2
Organism   Eubacterium limosum strain B2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4300206..4312095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5595_RS20235 (M5595_20235) - 4300547..4301344 (+) 798 WP_038350661.1 Cof-type HAD-IIB family hydrolase -
  M5595_RS20240 (M5595_20240) - 4301538..4302578 (-) 1041 WP_038350660.1 HAMP domain-containing sensor histidine kinase -
  M5595_RS20245 (M5595_20245) - 4302575..4303249 (-) 675 WP_038350659.1 response regulator transcription factor -
  M5595_RS20250 (M5595_20250) rcrP 4303450..4305213 (+) 1764 WP_038350658.1 ABC transporter ATP-binding protein Regulator
  M5595_RS20255 (M5595_20255) rcrQ 4305206..4307095 (+) 1890 WP_038350657.1 ABC transporter ATP-binding protein Regulator
  M5595_RS20260 (M5595_20260) - 4307420..4308652 (+) 1233 WP_038350656.1 aminopeptidase P N-terminal domain-containing protein -
  M5595_RS20265 (M5595_20265) metK 4309198..4310379 (+) 1182 WP_038350655.1 methionine adenosyltransferase -
  M5595_RS20270 (M5595_20270) ftsE 4310630..4311319 (+) 690 WP_038350654.1 cell division ATP-binding protein FtsE -

Sequence

Protein


Download         Length: 629 a.a.        Molecular weight: 68664.17 Da        Isoelectric Point: 5.8878

>NTDB_id=689307 M5595_RS20255 WP_038350657.1 4305206..4307095(+) (rcrQ) [Eubacterium limosum strain B2]
MPENEYTIGEHKNQTPKHSGLSGPGSSGGPGGPGGIGSVGAAEKADDFGKAIGQLLSYCKKYLPFMIVAIVLAAAGAILN
IIGPSKLADITDLITEGLMTGIDIEAVVRICILLIGLYICGWAFSLIQGQIMAVITQRVSKTLRTDISAKINRLPLKYYD
STSIGNTLSRVTNDIDTISQTMNQSLGTLVAALASFVGAIVMMFYTNWIMAFTAIIASLLGFALMMMMISHSQKFFLWQQ
TELGAINGHIEETYAGHNVVKAYNNEKKAKKEFCQMNSRLYDSAWKSQFMSGLMQPLMSFVGNFGYVTVCIVGAVLALNG
QISFGVIVAFMMYVRMFTQPLSQLAQAATSLQSTAAACERVFVFLDEKEMDDESYKAKELSNVRGDVEFRDVRFGYNEDK
TIINGFSAKAKAGQKIAIVGPTGAGKTTMVNLLMRFYETNSGDIFIDGTSSKDVTRENLRSQFCMVLQDTWLFEGTIREN
IVYSKEDVSDAEVEKACKAVGLHHYIKTLPKGYDTVLGDNASLSQGQKQLITIARAMIANAPILILDEATSSVDTRTETL
IQNAMDKLMAGRTSFVIAHRLSTIRNSDLILVMKDGDIIESGNHDTLMAQGGFYTELYNSQFVDIVESA

Nucleotide


Download         Length: 1890 bp        

>NTDB_id=689307 M5595_RS20255 WP_038350657.1 4305206..4307095(+) (rcrQ) [Eubacterium limosum strain B2]
ATGCCTGAAAATGAATATACGATAGGAGAACATAAAAATCAAACTCCGAAGCACAGTGGTCTCAGTGGTCCAGGCAGTTC
TGGTGGCCCTGGCGGTCCGGGAGGAATAGGTAGTGTGGGAGCCGCTGAAAAAGCCGACGACTTTGGAAAAGCAATCGGTC
AGCTTCTTTCTTATTGTAAGAAGTATTTGCCTTTTATGATCGTTGCCATTGTACTGGCTGCTGCAGGTGCAATTTTGAAC
ATCATCGGTCCCAGCAAGCTTGCAGATATTACAGACTTGATTACCGAAGGCTTAATGACTGGCATTGATATAGAAGCTGT
TGTCCGTATTTGTATTCTGCTGATTGGCCTCTATATCTGCGGTTGGGCATTCAGTCTGATCCAGGGACAAATTATGGCGG
TGATTACGCAGCGAGTATCCAAAACCTTGCGTACGGATATTTCTGCTAAGATTAACCGCTTGCCACTGAAATACTATGAT
TCTACCAGTATCGGCAATACCTTGTCCCGTGTTACCAACGATATAGACACTATATCTCAGACTATGAATCAGAGTTTAGG
TACTCTGGTGGCAGCATTGGCCTCTTTTGTGGGCGCCATCGTGATGATGTTTTATACCAACTGGATAATGGCGTTTACTG
CGATTATTGCAAGTTTATTGGGATTTGCATTGATGATGATGATGATCTCCCATTCACAAAAATTCTTTTTATGGCAGCAA
ACGGAACTTGGTGCCATCAACGGACACATTGAAGAAACCTATGCTGGCCACAATGTGGTAAAAGCCTATAACAATGAGAA
AAAGGCAAAAAAAGAATTCTGTCAAATGAACAGCCGCCTATATGACAGTGCTTGGAAAAGCCAGTTTATGTCTGGACTTA
TGCAGCCGCTGATGAGCTTTGTTGGTAACTTCGGTTATGTAACGGTCTGTATTGTGGGCGCAGTGCTTGCCCTGAATGGA
CAGATCTCTTTTGGTGTTATTGTTGCTTTTATGATGTATGTGCGTATGTTCACTCAACCGCTGTCTCAGCTCGCTCAGGC
GGCTACCAGCCTTCAGTCCACCGCCGCTGCCTGTGAACGTGTATTTGTGTTTTTGGATGAAAAAGAAATGGACGATGAAA
GTTACAAAGCAAAAGAACTTTCAAATGTTCGCGGTGATGTAGAATTTCGAGATGTCCGTTTCGGTTACAATGAGGATAAG
ACGATCATTAACGGTTTTTCAGCCAAAGCAAAAGCTGGCCAAAAAATCGCCATTGTCGGCCCTACCGGCGCAGGAAAGAC
TACAATGGTTAATCTGCTGATGCGGTTTTATGAAACTAATTCCGGTGATATTTTCATTGACGGAACTTCCAGCAAAGATG
TGACCAGAGAAAACCTGCGCAGCCAATTCTGTATGGTATTGCAGGATACATGGCTTTTTGAAGGTACCATCCGTGAAAAT
ATTGTTTACTCCAAGGAAGACGTTTCCGATGCGGAAGTTGAGAAAGCCTGCAAAGCAGTTGGCCTCCACCATTACATCAA
AACCCTTCCCAAAGGATACGACACGGTACTTGGCGACAATGCCAGCTTGTCCCAGGGGCAGAAGCAGCTTATTACTATTG
CACGCGCTATGATTGCAAATGCGCCGATTCTGATTCTGGATGAGGCAACAAGCTCTGTGGATACTCGAACTGAAACGCTT
ATCCAAAATGCTATGGATAAGCTGATGGCAGGCAGAACTTCCTTTGTTATTGCACACCGCCTGTCAACCATCCGTAATTC
TGATTTGATTCTGGTTATGAAGGATGGCGACATCATTGAGAGTGGCAATCACGATACTTTGATGGCACAGGGCGGTTTCT
ATACCGAACTATACAACAGTCAGTTTGTAGATATCGTCGAGTCGGCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(404-551)

ABC transporter transmembrane region (ABC_membrane)

(66-341)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.522

91.415

0.517