Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   UtA1_RS02870 Genome accession   NZ_AP018335
Coordinates   606622..607143 (+) Length   173 a.a.
NCBI ID   WP_096549978.1    Uniprot ID   -
Organism   Ureibacillus thermosphaericus strain A1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 601622..612143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UtA1_RS02835 - 601756..602463 (+) 708 WP_096549972.1 DUF554 domain-containing protein -
  UtA1_RS02840 yyaC 602380..603009 (-) 630 WP_096549973.1 spore protease YyaC -
  UtA1_RS02845 - 603109..604029 (+) 921 WP_096549974.1 mechanosensitive ion channel family protein -
  UtA1_RS02850 - 604029..604226 (+) 198 WP_096549975.1 DUF951 domain-containing protein -
  UtA1_RS02855 ychF 604387..605487 (+) 1101 WP_096549976.1 redox-regulated ATPase YchF -
  UtA1_RS02860 - 605562..606107 (-) 546 WP_172597817.1 DUF3267 domain-containing protein -
  UtA1_RS02865 rpsF 606296..606583 (+) 288 WP_016838916.1 30S ribosomal protein S6 -
  UtA1_RS02870 ssbA 606622..607143 (+) 522 WP_096549978.1 single-stranded DNA-binding protein Machinery gene
  UtA1_RS02875 rpsR 607189..607425 (+) 237 WP_016838914.1 30S ribosomal protein S18 -
  UtA1_RS02880 - 607944..608885 (+) 942 WP_096549979.1 YybS family protein -
  UtA1_RS02885 - 608898..610871 (+) 1974 WP_096549980.1 DHH family phosphoesterase -
  UtA1_RS02890 rplI 610868..611314 (+) 447 WP_016838911.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19191.32 Da        Isoelectric Point: 4.9725

>NTDB_id=68927 UtA1_RS02870 WP_096549978.1 606622..607143(+) (ssbA) [Ureibacillus thermosphaericus strain A1]
MINRVVLVGRLTKDPELRYTPNGVPVTRFTVAVNRTFTNQQGEREADFISCVAWRKQAENLANYMRKGSLVGIDGRIQTS
SFEGQDGKRVYMTEVVADSVQFLEPRSAQGQRPYGGQPSYGASQPPYGGTQDPFGVPFPSQPPQNQPNYTRVDEDPFASS
KGPIEVSEDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=68927 UtA1_RS02870 WP_096549978.1 606622..607143(+) (ssbA) [Ureibacillus thermosphaericus strain A1]
TTGATCAATCGTGTCGTATTAGTAGGTAGGCTAACAAAAGACCCTGAACTACGATACACGCCAAATGGAGTACCGGTAAC
TCGATTTACAGTTGCTGTAAATCGAACGTTTACGAATCAACAAGGTGAAAGAGAAGCGGATTTCATTAGCTGTGTAGCAT
GGAGAAAACAAGCTGAAAACCTCGCAAATTACATGAGAAAAGGAAGTCTCGTCGGTATTGATGGACGCATCCAAACTAGT
AGTTTCGAGGGTCAAGATGGCAAACGTGTTTACATGACAGAAGTCGTAGCAGATTCCGTGCAATTTTTAGAACCAAGAAG
TGCACAGGGGCAACGGCCATATGGGGGACAACCTTCGTACGGTGCAAGTCAACCTCCATACGGTGGCACGCAAGATCCAT
TTGGTGTACCATTCCCAAGTCAACCTCCTCAAAATCAGCCGAATTATACACGTGTAGATGAAGACCCATTTGCATCAAGC
AAAGGTCCAATTGAAGTTTCAGAAGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.578
  ssb Latilactobacillus sakei subsp. sakei 23K

52.601

100

0.526
  ssb Neisseria gonorrhoeae MS11

36.158

100

0.37
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.272

0.364
  ssb Neisseria meningitidis MC58

35.593

100

0.364

Multiple sequence alignment