Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | M5E03_RS11490 | Genome accession | NZ_CP097374 |
| Coordinates | 2243698..2244033 (+) | Length | 111 a.a. |
| NCBI ID | WP_024422969.1 | Uniprot ID | - |
| Organism | Bacillus safensis strain AHB11 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2238698..2249033
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5E03_RS11470 (M5E03_11470) | gcvT | 2239175..2240272 (-) | 1098 | WP_070326505.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| M5E03_RS11475 (M5E03_11475) | - | 2240834..2242504 (+) | 1671 | WP_034280230.1 | DEAD/DEAH box helicase | - |
| M5E03_RS11480 (M5E03_11480) | - | 2242519..2243316 (+) | 798 | WP_252049575.1 | YqhG family protein | - |
| M5E03_RS11485 (M5E03_11485) | - | 2243500..2243664 (+) | 165 | WP_075623492.1 | anti-repressor SinI family protein | - |
| M5E03_RS11490 (M5E03_11490) | sinR | 2243698..2244033 (+) | 336 | WP_024422969.1 | transcriptional regulator SinR | Regulator |
| M5E03_RS11495 (M5E03_11495) | tasA | 2244101..2244901 (-) | 801 | WP_034280222.1 | biofilm matrix protein TasA | - |
| M5E03_RS11500 (M5E03_11500) | sipW | 2244959..2245531 (-) | 573 | WP_252049576.1 | signal peptidase I SipW | - |
| M5E03_RS11505 (M5E03_11505) | tapA | 2245584..2246111 (-) | 528 | WP_041117967.1 | amyloid fiber anchoring/assembly protein TapA | - |
| M5E03_RS11510 (M5E03_11510) | - | 2246411..2246689 (+) | 279 | WP_061109527.1 | DUF3889 domain-containing protein | - |
| M5E03_RS11515 (M5E03_11515) | - | 2246724..2246918 (-) | 195 | WP_046311750.1 | YqzE family protein | - |
| M5E03_RS11520 (M5E03_11520) | - | 2246978..2247361 (-) | 384 | WP_041117969.1 | competence type IV pilus minor pilin ComGG | - |
| M5E03_RS11525 (M5E03_11525) | comGF | 2247358..2247885 (-) | 528 | WP_257788741.1 | competence type IV pilus minor pilin ComGF | - |
| M5E03_RS19115 | comGE | 2247797..2248111 (-) | 315 | WP_041106865.1 | competence type IV pilus minor pilin ComGE | - |
| M5E03_RS11530 (M5E03_11530) | comGD | 2248095..2248541 (-) | 447 | WP_081124572.1 | competence type IV pilus minor pilin ComGD | - |
| M5E03_RS11535 (M5E03_11535) | comGC | 2248534..2248827 (-) | 294 | WP_024422977.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12978.56 Da Isoelectric Point: 5.0026
>NTDB_id=689265 M5E03_RS11490 WP_024422969.1 2243698..2244033(+) (sinR) [Bacillus safensis strain AHB11]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=689265 M5E03_RS11490 WP_024422969.1 2243698..2244033(+) (sinR) [Bacillus safensis strain AHB11]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |