Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M5E03_RS08100 Genome accession   NZ_CP097374
Coordinates   1580776..1581678 (+) Length   300 a.a.
NCBI ID   WP_081124372.1    Uniprot ID   -
Organism   Bacillus safensis strain AHB11     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1575776..1586678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E03_RS08080 (M5E03_08080) - 1576439..1578178 (+) 1740 WP_252050419.1 glycosyltransferase -
  M5E03_RS08085 (M5E03_08085) - 1578175..1578450 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  M5E03_RS08090 (M5E03_08090) sucC 1578627..1579787 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  M5E03_RS08095 (M5E03_08095) sucD 1579810..1580712 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  M5E03_RS08100 (M5E03_08100) dprA 1580776..1581678 (+) 903 WP_081124372.1 DNA-processing protein DprA Machinery gene
  M5E03_RS08105 (M5E03_08105) topA 1581872..1583947 (+) 2076 WP_252050420.1 type I DNA topoisomerase -
  M5E03_RS08110 (M5E03_08110) trmFO 1584018..1585322 (+) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  M5E03_RS08115 (M5E03_08115) xerC 1585385..1586302 (+) 918 WP_034281771.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34121.56 Da        Isoelectric Point: 9.1076

>NTDB_id=689257 M5E03_RS08100 WP_081124372.1 1580776..1581678(+) (dprA) [Bacillus safensis strain AHB11]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDLTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHLYPKEHEKMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTEPT

Nucleotide


Download         Length: 903 bp        

>NTDB_id=689257 M5E03_RS08100 WP_081124372.1 1580776..1581678(+) (dprA) [Bacillus safensis strain AHB11]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACCTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACGCGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGATGATTGTCAGTGGTTTAGCTAAAGGAATTGATGGACTTGCACAT
AAAGAGTGCATCAGGAAAAAAGGAAAAACGATCGGCATTATAGCAGGCGGTTTTCAGCATTTATACCCAAAAGAGCATGA
GAAAATGGCTCAATACATGGGCGAGCATCATTTGCTTTTGTCAGAGCACCCTCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCACTGACGAAAGGAACCATCGTGATACAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCACTTGAGCAAGGAAAAGAGGTATTTGCGGTTGCTGGATCCATCTTTGATCCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGAGCAAAGCTTGTTCATTCAACAAAAGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACCAACATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.861

96

0.527
  dprA Legionella pneumophila strain ERS1305867

38.689

100

0.393
  dprA Lactococcus lactis subsp. cremoris KW2

39.1

96.333

0.377