Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   M5E02_RS15090 Genome accession   NZ_CP097373
Coordinates   2905854..2906495 (-) Length   213 a.a.
NCBI ID   WP_252056613.1    Uniprot ID   -
Organism   Bacillus safensis strain AHB2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2900854..2911495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E02_RS15055 (M5E02_15055) - 2901967..2902398 (+) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -
  M5E02_RS15060 (M5E02_15060) - 2902398..2902739 (+) 342 WP_048237322.1 Na(+)/H(+) antiporter subunit C -
  M5E02_RS15065 (M5E02_15065) - 2902732..2904210 (+) 1479 WP_252056612.1 Na+/H+ antiporter subunit D -
  M5E02_RS15070 (M5E02_15070) - 2904217..2904696 (+) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  M5E02_RS15075 (M5E02_15075) - 2904696..2904977 (+) 282 WP_024425942.1 Na(+)/H(+) antiporter subunit F1 -
  M5E02_RS15080 (M5E02_15080) mnhG 2904961..2905335 (+) 375 WP_252058325.1 monovalent cation/H(+) antiporter subunit G -
  M5E02_RS15085 (M5E02_15085) - 2905441..2905830 (-) 390 WP_048237324.1 hotdog fold thioesterase -
  M5E02_RS15090 (M5E02_15090) comA 2905854..2906495 (-) 642 WP_252056613.1 response regulator transcription factor Regulator
  M5E02_RS15095 (M5E02_15095) comP 2906576..2908888 (-) 2313 WP_252056614.1 ATP-binding protein Regulator
  M5E02_RS15100 (M5E02_15100) comX 2908943..2909113 (-) 171 WP_165585047.1 competence pheromone ComX -
  M5E02_RS15105 (M5E02_15105) - 2909110..2910024 (-) 915 WP_252056615.1 polyprenyl synthetase family protein -
  M5E02_RS15110 (M5E02_15110) degQ 2910176..2910316 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  M5E02_RS15115 (M5E02_15115) - 2910822..2911178 (+) 357 WP_048654571.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24220.57 Da        Isoelectric Point: 4.5799

>NTDB_id=689217 M5E02_RS15090 WP_252056613.1 2905854..2906495(-) (comA) [Bacillus safensis strain AHB2]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQEQQNDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=689217 M5E02_RS15090 WP_252056613.1 2905854..2906495(-) (comA) [Bacillus safensis strain AHB2]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGACGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAGCAAATCTTAGAAACCAACCATCAAGTAAAAATTATC
ATTTACACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGTAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGCACATTACAAGGAGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGAGCAGCAAAATGATCACGACCTCTTAACTGAACGAGAGTGTTTGATC
CTTAGAGAAGTAGAAAAAGGATACACAAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723