Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   M5E02_RS11175 Genome accession   NZ_CP097373
Coordinates   2200012..2201745 (-) Length   577 a.a.
NCBI ID   WP_252056268.1    Uniprot ID   -
Organism   Bacillus safensis strain AHB2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2195012..2206745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E02_RS11160 (M5E02_11160) - 2195889..2196989 (-) 1101 WP_252056267.1 Rap family tetratricopeptide repeat protein -
  M5E02_RS11165 (M5E02_11165) spo0A 2197447..2198250 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  M5E02_RS11170 (M5E02_11170) spoIVB 2198536..2199813 (-) 1278 WP_048239243.1 SpoIVB peptidase -
  M5E02_RS11175 (M5E02_11175) recN 2200012..2201745 (-) 1734 WP_252056268.1 DNA repair protein RecN Machinery gene
  M5E02_RS11180 (M5E02_11180) argR 2201779..2202228 (-) 450 WP_024422938.1 transcriptional regulator ArgR -
  M5E02_RS11185 (M5E02_11185) - 2202394..2203248 (-) 855 WP_252056269.1 TlyA family RNA methyltransferase -
  M5E02_RS11190 (M5E02_11190) dxs 2203245..2205146 (-) 1902 WP_252056270.1 1-deoxy-D-xylulose-5-phosphate synthase -
  M5E02_RS11195 (M5E02_11195) - 2205297..2206187 (-) 891 WP_252056271.1 polyprenyl synthetase family protein -
  M5E02_RS11200 (M5E02_11200) - 2206177..2206437 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64675.44 Da        Isoelectric Point: 4.7769

>NTDB_id=689204 M5E02_RS11175 WP_252056268.1 2200012..2201745(-) (recN) [Bacillus safensis strain AHB2]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISILREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALE
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDERLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDNLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSAFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIHKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLNQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=689204 M5E02_RS11175 WP_252056268.1 2200012..2201745(-) (recN) [Bacillus safensis strain AHB2]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTCCT
AACAGGGGAAACAGGTGCCGGAAAATCCATCATGATTGACGCTGTCTCACTTCTCGTAGGAGGAAGAGGGTCTTCTGAAT
TTGTCCGCTACGGTGAAAAAAAGGCAGAGCTGGAAGGGCTTTTTCTTGTACCGGCCGATCATCCTGTATTTGCTCTTTGC
GAAGAGCAAGGAATTGATGCGTCAGATGAAATGATGATTCTCCGCCGTGATATTAACAACAGCGGGAAAAGCATTTGCCG
CATTAATGGAAAGCTTGTCACCATCTCAATTTTACGGGAAGTAGGACGGCTTTTGCTTGATATACATGGTCAGCACGATA
ACCAACTGCTCATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGTGCAGAAGAAATTGCACCGGCTCTCGAG
CAGTATCAAGAAGCATATGACCAATATATGAAGACGGCTCAAAAGCTAAGGCAGCTGTCTGAGAACGAGCAGGAAATGGT
GCACCGGTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCGGCGCAATTAGAGCCAGGAGAAGATGAGAGGCTTC
AGGAGGAGCGTCATCAAATCAGCAACTACGAAAAAATCTATTCCTCACTTCAAAACGCGTATAACGCCTTGCGTAATGAA
CAAGGAGGACTAGATTGGGTTGGCATGTCCTCAAGCGAGCTTGAGCAGGTGTCTGAGATCAACGATAATTTGAAGAAGCT
ATCTGAACAAGTGTCGAACTCCTACTACTTATTAGAGGATTCAACCTTCCAAATGCGAAGCATGCTGGATCAATTAGAAT
TCGATCCGGCTCGTCTTGATTTTATTGAATCCAGGCTGAATGAAATGAAGCAGTTAAAACGTAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATCCAAAATCGAGACAGCCACCTCCAGACGCT
TAAAAATAAACTGGATGCGATGAGCCGTGATGCTCTGCTCGAAGCACTTAATGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCCAAGCAAATTCAAACGGAGCTCAAGGATTTGTATATGGAGAAGTCCGCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCTTTTGGCAGCACCGATTGTCCGTTATTAGACGGAAAACCTGTCCAGCTCGGAAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCCGGTGGAGAAATCTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCCAAACAAGACGTCACATCCATTATTTTTGATGAGGTTGATACAGGC
GTCAGCGGCAGAGTCGCACAAGCCATTGCCGAAAAAATTCACAAAGTAGCGTCTGGGTCACAAGTGCTCTGCATTACACA
TCTGCCTCAAGTAGCAGCAATGGCCGACACACATCTTTTCATTTCGAAACGCTCGAAAGCGGGCAGAACACTGACAAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTGACTGAGCTGACAAAA
CAGCACGCAAAAGAACTATTGAACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

76.083

100

0.761