Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CDC37_RS05930 Genome accession   NZ_AP018254
Coordinates   1526043..1527596 (-) Length   517 a.a.
NCBI ID   WP_096620928.1    Uniprot ID   A0A1Z4NFV8
Organism   Calothrix sp. NIES-3974     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1521043..1532596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDC37_RS05910 (NIES3974_12110) - 1521595..1521927 (-) 333 WP_096620924.1 hypothetical protein -
  CDC37_RS05915 (NIES3974_12120) - 1522914..1523639 (-) 726 WP_096620925.1 peptidylprolyl isomerase -
  CDC37_RS05920 (NIES3974_12130) aroA 1523713..1525083 (-) 1371 WP_096620926.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  CDC37_RS05925 (NIES3974_12140) - 1525414..1525896 (+) 483 WP_096620927.1 hypothetical protein -
  CDC37_RS05930 (NIES3974_12150) radA 1526043..1527596 (-) 1554 WP_096620928.1 DNA repair protein RadA Machinery gene
  CDC37_RS05935 (NIES3974_12160) - 1527769..1528497 (+) 729 WP_096620929.1 response regulator transcription factor -
  CDC37_RS05940 (NIES3974_12170) - 1529200..1529841 (+) 642 WP_096620930.1 cofactor assembly of complex C subunit B -
  CDC37_RS05945 (NIES3974_12180) - 1530251..1530958 (+) 708 WP_096620931.1 class I SAM-dependent methyltransferase -
  CDC37_RS05950 (NIES3974_12190) - 1530974..1531834 (+) 861 WP_096620932.1 transposase -
  CDC37_RS05955 (NIES3974_12200) - 1532057..1532572 (+) 516 WP_096620933.1 DUF456 family protein -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 56165.06 Da        Isoelectric Point: 5.2014

>NTDB_id=68910 CDC37_RS05930 WP_096620928.1 1526043..1527596(-) (radA) [Calothrix sp. NIES-3974]
MSKSRSIYVCTECGYESPQWFGRCPACGTYNSLEEEITIQSSTDVPSRGVGRWHGESTNSKKSNKPPKPRASLKFDQISD
RQVTRWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSSQLAQKYRILYVSGEESGQQVKLRASRLGVSPTTL
GLENGNGKGKNSVQINQLEEDDGQEPKNPTIESLDSDLYVLPETDLEEILREVDSLKPNLTVIDSIQTVFFPSLTSAPGS
VAQVRECTAALMKVAKHEDITMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMV
ENGLREVPNPSELFLGNRDDPAPGSAIVVACEGTRPIVVELQALVSPTSYPSPRRSTTGVDYNRLMQILAVLEKRVGIPM
SKLDAYVASSGGLNVEEPAVDLGVAIALVASFRDRIVDSSTVLIGEVSLGGQVRPVSQMELRLKEAAKLGFKRAIVPKGQ
KFPKLDIEITPVSKVIDAIIAAIPQQSLTEEDLRMEE

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=68910 CDC37_RS05930 WP_096620928.1 1526043..1527596(-) (radA) [Calothrix sp. NIES-3974]
ATGTCTAAATCTCGCTCAATTTACGTTTGCACTGAATGTGGTTATGAATCCCCCCAATGGTTTGGTCGTTGTCCAGCTTG
TGGTACCTATAATTCTCTAGAAGAAGAAATTACCATTCAATCCTCCACTGATGTTCCCAGTCGGGGAGTAGGTCGTTGGC
ATGGGGAATCGACAAATAGTAAAAAAAGTAACAAACCCCCCAAACCTAGGGCATCCTTAAAATTCGATCAAATCAGCGAT
CGCCAAGTGACGCGGTGGGAATCTGGGTATGGCGAGTTGGATCGGGTATTGGGTGGGGGTGTGGTTCCCGGTTCGATGGT
GTTGATTGGGGGAGACCCTGGGATTGGGAAATCTACCTTATTGTTGCAGGTATCCAGTCAACTAGCTCAGAAGTATCGCA
TTCTCTACGTATCTGGGGAAGAGTCGGGACAACAGGTTAAGTTACGTGCGTCCCGTTTAGGTGTTTCGCCGACAACCCTT
GGTTTAGAGAACGGCAACGGTAAGGGGAAAAATTCAGTGCAAATAAACCAACTTGAAGAGGACGATGGTCAGGAACCGAA
AAACCCAACGATCGAGTCCTTAGACAGCGATTTATATGTATTACCGGAAACCGACCTGGAAGAAATTCTCCGGGAAGTTG
ATTCCCTCAAACCTAACCTCACCGTCATTGACAGTATTCAAACCGTATTTTTTCCCTCGTTAACTTCCGCACCAGGTTCA
GTAGCCCAAGTCCGAGAATGTACGGCAGCTCTGATGAAAGTCGCCAAGCACGAAGATATCACCATGTTGATCGTCGGACA
CGTCACCAAAGAAGGCGCGATCGCCGGACCAAAAGTGTTAGAACACCTAGTGGATACGGTGTTATATTTTGAAGGAGATC
GATTCGCTTCCCATCGGTTATTACGGACGGTAAAAAATCGGTTTGGCGCAACCCATGAAATTGGTATCTTTGAAATGGTG
GAAAATGGGTTACGGGAAGTACCTAACCCCAGCGAATTATTTTTAGGTAATCGGGATGACCCTGCACCAGGAAGCGCCAT
TGTGGTAGCCTGTGAAGGAACCCGTCCCATCGTTGTCGAATTACAAGCTTTAGTCAGTCCCACCAGTTACCCTTCTCCCC
GCAGGTCAACGACAGGTGTGGATTATAACCGGTTGATGCAGATTCTGGCAGTTCTCGAAAAGCGGGTGGGGATACCGATG
TCGAAATTAGATGCTTATGTAGCATCATCGGGGGGATTAAACGTAGAAGAACCAGCCGTAGATTTAGGTGTAGCCATTGC
CTTAGTCGCTAGTTTTCGCGATCGCATTGTCGATTCCAGTACCGTGTTAATTGGTGAAGTCAGTCTTGGTGGTCAAGTAC
GACCAGTGTCACAAATGGAACTACGGTTAAAGGAAGCCGCTAAACTGGGATTTAAACGCGCCATTGTTCCTAAAGGGCAA
AAATTTCCCAAACTAGACATCGAAATCACCCCCGTATCCAAGGTCATTGATGCCATTATTGCCGCTATTCCTCAACAGTC
GCTGACGGAAGAAGATTTGCGAATGGAAGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(412-478)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(89-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z4NFV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.405

97.485

0.482
  radA Streptococcus pneumoniae Rx1

46.154

98.066

0.453
  radA Streptococcus pneumoniae D39

46.154

98.066

0.453
  radA Streptococcus pneumoniae R6

46.154

98.066

0.453
  radA Streptococcus pneumoniae TIGR4

46.154

98.066

0.453
  radA Streptococcus mitis SK321

45.759

98.066

0.449
  radA Streptococcus mitis NCTC 12261

47.49

92.456

0.439

Multiple sequence alignment