Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   M5C55_RS09060 Genome accession   NZ_CP097359
Coordinates   1935052..1935387 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain H208     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1930052..1940387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5C55_RS09040 (M5C55_09040) gcvT 1930659..1931759 (-) 1101 WP_032874033.1 glycine cleavage system aminomethyltransferase GcvT -
  M5C55_RS09045 (M5C55_09045) - 1932182..1933852 (+) 1671 WP_032874031.1 SNF2-related protein -
  M5C55_RS09050 (M5C55_09050) - 1933874..1934668 (+) 795 WP_007612541.1 YqhG family protein -
  M5C55_RS09055 (M5C55_09055) sinI 1934845..1935018 (+) 174 WP_032874029.1 anti-repressor SinI family protein Regulator
  M5C55_RS09060 (M5C55_09060) sinR 1935052..1935387 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  M5C55_RS09065 (M5C55_09065) - 1935435..1936220 (-) 786 WP_032874027.1 TasA family protein -
  M5C55_RS09070 (M5C55_09070) - 1936285..1936869 (-) 585 WP_032874025.1 signal peptidase I -
  M5C55_RS09075 (M5C55_09075) tapA 1936841..1937512 (-) 672 WP_032874023.1 amyloid fiber anchoring/assembly protein TapA -
  M5C55_RS09080 (M5C55_09080) - 1937771..1938100 (+) 330 WP_032874021.1 DUF3889 domain-containing protein -
  M5C55_RS09085 (M5C55_09085) - 1938141..1938320 (-) 180 WP_022552966.1 YqzE family protein -
  M5C55_RS09090 (M5C55_09090) comGG 1938377..1938754 (-) 378 WP_032874019.1 competence type IV pilus minor pilin ComGG Machinery gene
  M5C55_RS09095 (M5C55_09095) comGF 1938755..1939219 (-) 465 WP_223813077.1 competence type IV pilus minor pilin ComGF -
  M5C55_RS09100 (M5C55_09100) comGE 1939164..1939478 (-) 315 WP_032874016.1 competence type IV pilus minor pilin ComGE Machinery gene
  M5C55_RS09105 (M5C55_09105) comGD 1939462..1939899 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  M5C55_RS09110 (M5C55_09110) comGC 1939889..1940197 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=689033 M5C55_RS09060 WP_003153104.1 1935052..1935387(+) (sinR) [Bacillus velezensis strain H208]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=689033 M5C55_RS09060 WP_003153104.1 1935052..1935387(+) (sinR) [Bacillus velezensis strain H208]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991