Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   M5598_RS03025 Genome accession   NZ_CP097355
Coordinates   620338..620952 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 16-VB00198     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 615338..625952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5598_RS03015 (M5598_03015) aceF 616620..618515 (+) 1896 WP_228086644.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  M5598_RS03020 (M5598_03020) lpdA 618783..620210 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  M5598_RS03025 (M5598_03025) opaR 620338..620952 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  M5598_RS03030 (M5598_03030) hpt 621271..621801 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  M5598_RS03035 (M5598_03035) can 621875..622543 (-) 669 WP_005462578.1 carbonate dehydratase -
  M5598_RS03040 (M5598_03040) - 622827..624497 (+) 1671 WP_031816750.1 SulP family inorganic anion transporter -
  M5598_RS03045 (M5598_03045) - 624753..625670 (+) 918 WP_031816749.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=688980 M5598_RS03025 WP_005479697.1 620338..620952(-) (opaR) [Vibrio parahaemolyticus strain 16-VB00198]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=688980 M5598_RS03025 WP_005479697.1 620338..620952(-) (opaR) [Vibrio parahaemolyticus strain 16-VB00198]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAGCATGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCACTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701