Detailed information NTG0688977

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M5598_RS02975
• Genome accession: NZ_CP097355
• Coordinates: 606596..607465 (-)
• Length: 289 a.a.
• NCBI ID: WP_031816757.1
• Uniprot ID: A0AA46Z2P0
• Organism: Vibrio parahaemolyticus strain 16-VB00198
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 601596..612465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M5598_RS02940 (M5598_02940)	rpsP	602664..602912 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
M5598_RS02945 (M5598_02945)	rimM	602941..603489 (+)	549	WP_005462552.1	ribosome maturation factor RimM	-
M5598_RS02950 (M5598_02950)	trmD	603517..604260 (+)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
M5598_RS02955 (M5598_02955)	rplS	604302..604655 (+)	354	WP_005462554.1	50S ribosomal protein L19	-
M5598_RS02960 (M5598_02960)	yacG	604950..605144 (-)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
M5598_RS02965 (M5598_02965)	zapD	605213..605953 (-)	741	WP_023624252.1	cell division protein ZapD	-
M5598_RS02970 (M5598_02970)	coaE	605981..606595 (-)	615	WP_031816758.1	dephospho-CoA kinase	-
M5598_RS02975 (M5598_02975)	pilD	606596..607465 (-)	870	WP_031816757.1	A24 family peptidase	Machinery gene
M5598_RS02980 (M5598_02980)	pilC	607530..608753 (-)	1224	WP_005462561.1	type II secretion system F family protein	Machinery gene
M5598_RS02985 (M5598_02985)	pilB	608778..610463 (-)	1686	WP_228086646.1	type IV-A pilus assembly ATPase PilB	Machinery gene
M5598_RS02990 (M5598_02990)	-	610463..610921 (-)	459	WP_031816754.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
M5598_RS02995 (M5598_02995)	nadC	611184..612071 (-)	888	WP_025638275.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32388.41 Da
• Isoelectric Point: 6.8205

>NTDB_id=688977 M5598_RS02975 WP_031816757.1 606596..607465(-) (pilD) [Vibrio parahaemolyticus strain 16-VB00198]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIQPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLSAACAGFVAYHFGFNYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISTVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=688977 M5598_RS02975 WP_031816757.1 606596..607465(-) (pilD) [Vibrio parahaemolyticus strain 16-VB00198]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTCAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCTCTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAACTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCACTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	87.889	100	0.879
pilD	Vibrio cholerae strain A1552	72.569	99.654	0.723
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	46.377	95.502	0.443